Strain identifier

BacDive ID: 378

Type strain: Yes

Species: Bordetella hinzii

Strain Designation: Blackall TC 58

Strain history: CIP <- 1995, LMG <- J. Hommez, Belgium: strain Blackall TC 58

NCBI tax ID(s): 398518 (strain), 103855 (species)

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General

@ref: 4303

BacDive-ID: 378

DSM-Number: 11333

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped, colony-forming, human pathogen

description: Bordetella hinzii Blackall TC 58 is a mesophilic, Gram-negative, motile human pathogen that forms circular colonies and was isolated from chicken trachea.

NCBI tax id

NCBI tax idMatching level
103855species
398518strain

strain history

@refhistory
4303<- LMG <- P. Blackall (Bordetella avium-like strain TC 58)
67770LMG 13501 <-- P. J. Blackall TC58.
119904CIP <- 1995, LMG <- J. Hommez, Belgium: strain Blackall TC 58

doi: 10.13145/bacdive378.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella hinzii
  • full scientific name: Bordetella hinzii Vandamme et al. 1995

@ref: 4303

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella hinzii

full scientific name: Bordetella hinzii Vandamme et al. 1995

strain designation: Blackall TC 58

type strain: yes

Morphology

cell morphology

  • @ref: 23281
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

@refcolony sizecolony colorcolony shapeincubation period
232812 mmgreyishcircular2 days
232815 mm
517802 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4303CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
41209MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
4303TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
4303COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119904CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
4303positivegrowth37mesophilic
41209positivegrowth37mesophilic
51780positivegrowth30mesophilic
51780positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

tolerance

  • @ref: 23281
  • compound: Cetrimide

spore formation

  • @ref: 23281
  • spore formation: no

halophily

  • @ref: 23281
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 6.5 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2328127689decanoate-assimilation
2328117634D-glucose-assimilation
2328117306maltose-assimilation
2328116899D-mannitol-assimilation
2328116024D-mannose-assimilation
232818391D-gluconate-assimilation
2328130849L-arabinose-assimilation
23281506227N-acetylglucosamine-assimilation
2328117634D-glucose-fermentation
232814853esculin-hydrolysis
232815291gelatin-hydrolysis
2328117632nitrate-reduction
2328117128adipate+assimilation
2328116947citrate+assimilation
2328125115malate+assimilation
2328118401phenylacetate+assimilation
2328127856acetamide+builds base from
2328117128adipate+builds base from
2328115428glycine+builds base from
2328148537malonamide+builds base from
2328115792malonate+builds base from
2328145422propionamide+builds base from
2328131011valerate+builds base from
2328116947citrate+carbon source
2328128938ammonium+nitrogen source
6836925115malate+assimilation
6836917128adipate+assimilation
6836924265gluconate-assimilation
6836959640N-acetylglucosamine-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2328135581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitecitrate testindole test
2328116947citrate+
6836935581indole-

enzymes

@refvalueactivityec
23281catalase+1.11.1.6
23281cytochrome oxidase+1.9.3.1
23281gelatinase-
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4303---------------++++++
4303----------------+++++
4303-----------+/--+/--++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitudesampling dategeographic locationisolation date
4303chicken tracheaAustraliaAUSAustralia and Oceania-27133
51780Chicken tracheaAustraliaAUSAustralia and Oceania1990Moorooka
67770Chicken trachea
119904Chicken, tracheaAustraliaAUSAustralia and Oceania1993

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Oral cavity and airways#Trachea

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
4303yesyes2Risk group (German classification)
1199042Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Bordetella hinzii 16S ribosomal RNA gene, complete sequence
  • accession: AF177667
  • length: 1522
  • database: ena
  • NCBI tax ID: 398518

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bordetella hinzii LMG 13501398518.3wgspatric398518
66792Bordetella hinzii LMG 135012728369170draftimg398518
67770Bordetella hinzii NCTC13199GCA_900637615completencbi103855
67770Bordetella hinzii LMG 13501GCA_001548475contigncbi398518

GC content

@refGC-contentmethod
2328166.00thermal denaturation, midpoint method (Tm)
6777066high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.567no
anaerobicno99.068no
halophileno76.231yes
spore-formingno93.879no
glucose-utilno70.215yes
aerobicyes92.59no
motileyes88.688yes
flagellatedno56.635no
thermophileno99.607yes
glucose-fermentno90.853no

External links

@ref: 4303

culture collection no.: DSM 11333, ATCC 51783, CIP 104527, LMG 13501, CCUG 33847, CCM 4584, TC 58, JCM 15550

straininfo link

  • @ref: 70058
  • straininfo: 9479

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4303Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11333)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11333
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23281P. VANDAMME, J. HOMMEZ, M. VANCANNEYT, M. MONSIEURS, B. HOSTE, B. COOKSON, C. H. WIRSING VON KÖNIG, K. KERSTERS, P. J. BLACKALL10.1099/00207713-45-1-37Bordetella hinzii sp. nov., Isolated from Poultry and HumansIJSEM 45: 37-45 19957857806
41209Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16446
51780Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33847)https://www.ccug.se/strain?id=33847
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
70058Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9479.1StrainInfo: A central database for resolving microbial strain identifiers
119904Curators of the CIPCollection of Institut Pasteur (CIP 104527)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104527