Strain identifier
BacDive ID: 377
Type strain:
Species: Bordetella avium
Strain history: CIP <- 1989, LMG <- 1979, K.H. Hinz: strain 591-77, Bordetella bronchiseptica
NCBI tax ID(s): 521 (species)
General
@ref: 4302
BacDive-ID: 377
DSM-Number: 11332
keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoorganotroph, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen
description: Bordetella avium DSM 11332 is an aerobe, chemoorganotroph, mesophilic animal pathogen that was isolated from turkey, air sac exudate.
NCBI tax id
- NCBI tax id: 521
- Matching level: species
strain history
@ref | history |
---|---|
4302 | <- LMG <- K. H. Hinz (Bordetella bronchiseptica-like strain 591-77) |
116668 | CIP <- 1989, LMG <- 1979, K.H. Hinz: strain 591-77, Bordetella bronchiseptica |
doi: 10.13145/bacdive377.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella avium
- full scientific name: Bordetella avium Kersters et al. 1984
@ref: 4302
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella avium
full scientific name: Bordetella avium Kersters et al. 1984
type strain: yes
Morphology
cell morphology
- @ref: 23280
- gram stain: negative
- cell length: 1-2 µm
- cell width: 0.4-0.5 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: peritrichous
colony morphology
@ref | incubation period | colony size | colony shape | medium used |
---|---|---|---|---|
23280 | 2-4 days | |||
23280 | 1 mm | circular | blood agar |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4302 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
4302 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
23280 | blood agar | yes | ||
23280 | MacConkey | yes | ||
23280 | Nutrient agar (NA) | yes | ||
23280 | Salmonella-shigella agar | yes | ||
23280 | VI agar | yes | ||
40613 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
116668 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4302 | positive | growth | 37 | mesophilic |
23280 | positive | optimum | 37 | mesophilic |
40613 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 23280
- oxygen tolerance: aerobe
nutrition type
- @ref: 23280
- type: chemoorganotroph
spore formation
- @ref: 23280
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23280 | 17234 | glucose | - | builds acid from |
23280 | 50724 | butanamide | - | builds base from |
23280 | 17234 | glucose | - | builds base from |
23280 | 48537 | malonamide | - | builds base from |
23280 | 17632 | nitrate | - | builds gas from |
23280 | 16301 | nitrite | - | builds gas from |
23280 | 8391 | D-gluconate | - | carbon source |
23280 | 17234 | glucose | - | carbon source |
23280 | 29805 | glycolate | - | carbon source |
23280 | 17240 | itaconate | - | carbon source |
23280 | 15792 | malonate | - | carbon source |
23280 | 30928 | meso-tartrate | - | carbon source |
23280 | 17774 | pimelate | - | carbon source |
23280 | 18222 | xylose | - | carbon source |
23280 | 17128 | adipate | - | growth |
23280 | 18401 | phenylacetate | - | growth |
23280 | 4853 | esculin | - | hydrolysis |
23280 | 5291 | gelatin | - | hydrolysis |
23280 | 17632 | nitrate | - | reduction |
23280 | 35391 | aspartate | + | assimilation |
23280 | 29987 | glutamate | + | assimilation |
23280 | 26271 | proline | + | assimilation |
23280 | 15361 | pyruvate | + | assimilation |
23280 | 30031 | succinate | + | assimilation |
23280 | 27856 | acetamide | + | builds base from |
23280 | 30089 | acetate | + | builds base from |
23280 | 17128 | adipate | + | builds base from |
23280 | 16947 | citrate | + | builds base from |
23280 | 16397 | formamide | + | builds base from |
23280 | 15740 | formate | + | builds base from |
23280 | 28300 | glutamine | + | builds base from |
23280 | 17196 | L-asparagine | + | builds base from |
23280 | 45422 | propionamide | + | builds base from |
23280 | 17272 | propionate | + | builds base from |
23280 | 143136 | succinamate | + | builds base from |
23280 | 16947 | citrate | + | carbon source |
23280 | 29985 | L-glutamate | + | carbon source |
23280 | 17203 | L-proline | + | carbon source |
23280 | 15361 | pyruvate | + | carbon source |
23280 | 30031 | succinate | + | carbon source |
23280 | 30916 | 2-oxoglutarate | + | growth |
23280 | 16947 | citrate | + | growth |
23280 | 29806 | fumarate | + | growth |
23280 | 17859 | glutaric acid | + | growth |
23280 | 29991 | L-aspartate | + | growth |
23280 | 29985 | L-glutamate | + | growth |
23280 | 17203 | L-proline | + | growth |
23280 | 24996 | lactate | + | growth |
23280 | 25115 | malate | + | growth |
23280 | 15361 | pyruvate | + | growth |
23280 | 30031 | succinate | + | growth |
23280 | 28938 | ammonium | + | nitrogen source |
23280 | 30089 | acetate | +/- | growth |
23280 | 37054 | 3-hydroxybutyrate | +/- | growth |
23280 | 17895 | L-tyrosine | +/- | growth |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | is resistant | resistance conc. | sensitivity conc. |
---|---|---|---|---|---|---|---|
23280 | 18208 | penicillin g | yes | no | yes | 2 Unit (disc) | |
23280 | 18208 | penicillin g | yes | yes | 10 Unit (disc) |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23280 | 35581 | indole | no |
68369 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | citrate test | indole test |
---|---|---|---|---|
23280 | 16947 | citrate | + | |
68369 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23280 | acid phosphatase | + | 3.1.3.2 |
23280 | alkaline phosphatase | +/- | 3.1.3.1 |
23280 | alpha-chymotrypsin | +/- | 3.4.21.1 |
23280 | catalase | + | 1.11.1.6 |
23280 | cytochrome oxidase | - | 1.9.3.1 |
23280 | esterase (C 4) | + | |
23280 | esterase lipase (C 8) | +/- | |
23280 | L-leucyl-2-naphthylamide hydrolase | + | |
23280 | phenylalanine deaminase | - | 4.3.1.5 |
23280 | phosphoamidase | + | 3.9.1.1 |
23280 | urease | - | 3.5.1.5 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4302 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | +/- | + | + | + |
4302 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | +/- | + | + | + |
4302 | - | - | - | - | - | - | - | - | - | +/- | - | +/- | - | - | - | - | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
4302 | turkey, air sac exudate | Hannover | Germany | DEU | Europe | ||
46006 | Turkey poults respiratory tract (Air sac exudate) | Germany | DEU | Europe | 1977 | ||
116668 | Animal, Turkey, respiratory tract | Hanover | Germany | DEU | Europe | 1977 |
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Birds |
#Host Body-Site | #Oral cavity and airways |
#Host Body Product | #Fluids |
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
4302 | yes | 2 | Risk group (German classification) |
116668 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bordetella avium ATCC 35086 16S rRNA, partial sequence | U04947 | 1464 | ena | 521 |
4302 | Bordetella avium 16S ribosomal RNA gene, complete sequence | AF177666 | 1522 | ena | 521 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bordetella avium ATCC 35086 | GCA_003581385 | contig | ncbi | 521 |
66792 | Bordetella avium strain ATCC 35086 | 521.38 | wgs | patric | 521 |
66792 | Bordetella avium ATCC 35086 | 2916308423 | draft | img | 521 |
GC content
- @ref: 23280
- GC-content: 61.6
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 98.787 | yes |
anaerobic | no | 97.447 | yes |
halophile | no | 82.079 | no |
spore-forming | no | 94.825 | yes |
glucose-util | no | 79.292 | no |
aerobic | yes | 86.75 | yes |
thermophile | no | 98.818 | yes |
motile | yes | 89.173 | yes |
flagellated | yes | 75.123 | yes |
glucose-ferment | no | 88.632 | yes |
External links
@ref: 4302
culture collection no.: DSM 11332, ATCC 35086, CCUG 13726, LMG 1852, Hinz 591-77, CIP 103348, NCTC 12033
straininfo link
- @ref: 70057
- straininfo: 1259
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4302 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11332) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11332 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23280 | K. Kersters, K.-H. Hinz, A. Hertle, P. Segers, A. Lievens, O. Siegmann, J. De Ley | 10.1099/00207713-34-1-56 | Bordetella avium sp. nov., Isolated from the Respiratory Tracts of Turkeys and Other Birds | IJSEM 34: 56-70 1984 | ||
40613 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15136 | ||||
46006 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 13726) | https://www.ccug.se/strain?id=13726 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
70057 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1259.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116668 | Curators of the CIP | Collection of Institut Pasteur (CIP 103348) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103348 |