Strain identifier

BacDive ID: 377

Type strain: Yes

Species: Bordetella avium

Strain history: CIP <- 1989, LMG <- 1979, K.H. Hinz: strain 591-77, Bordetella bronchiseptica

NCBI tax ID(s): 521 (species)

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General

@ref: 4302

BacDive-ID: 377

DSM-Number: 11332

keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoorganotroph, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen

description: Bordetella avium DSM 11332 is an aerobe, chemoorganotroph, mesophilic animal pathogen that was isolated from turkey, air sac exudate.

NCBI tax id

  • NCBI tax id: 521
  • Matching level: species

strain history

@refhistory
4302<- LMG <- K. H. Hinz (Bordetella bronchiseptica-like strain 591-77)
116668CIP <- 1989, LMG <- 1979, K.H. Hinz: strain 591-77, Bordetella bronchiseptica

doi: 10.13145/bacdive377.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella avium
  • full scientific name: Bordetella avium Kersters et al. 1984

@ref: 4302

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella avium

full scientific name: Bordetella avium Kersters et al. 1984

type strain: yes

Morphology

cell morphology

  • @ref: 23280
  • gram stain: negative
  • cell length: 1-2 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

@refincubation periodcolony sizecolony shapemedium used
232802-4 days
232801 mmcircularblood agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4302COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
4302CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
23280blood agaryes
23280MacConkeyyes
23280Nutrient agar (NA)yes
23280Salmonella-shigella agaryes
23280VI agaryes
40613MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116668CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
4302positivegrowth37mesophilic
23280positiveoptimum37mesophilic
40613positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23280
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 23280
  • type: chemoorganotroph

spore formation

  • @ref: 23280
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2328017234glucose-builds acid from
2328050724butanamide-builds base from
2328017234glucose-builds base from
2328048537malonamide-builds base from
2328017632nitrate-builds gas from
2328016301nitrite-builds gas from
232808391D-gluconate-carbon source
2328017234glucose-carbon source
2328029805glycolate-carbon source
2328017240itaconate-carbon source
2328015792malonate-carbon source
2328030928meso-tartrate-carbon source
2328017774pimelate-carbon source
2328018222xylose-carbon source
2328017128adipate-growth
2328018401phenylacetate-growth
232804853esculin-hydrolysis
232805291gelatin-hydrolysis
2328017632nitrate-reduction
2328035391aspartate+assimilation
2328029987glutamate+assimilation
2328026271proline+assimilation
2328015361pyruvate+assimilation
2328030031succinate+assimilation
2328027856acetamide+builds base from
2328030089acetate+builds base from
2328017128adipate+builds base from
2328016947citrate+builds base from
2328016397formamide+builds base from
2328015740formate+builds base from
2328028300glutamine+builds base from
2328017196L-asparagine+builds base from
2328045422propionamide+builds base from
2328017272propionate+builds base from
23280143136succinamate+builds base from
2328016947citrate+carbon source
2328029985L-glutamate+carbon source
2328017203L-proline+carbon source
2328015361pyruvate+carbon source
2328030031succinate+carbon source
23280309162-oxoglutarate+growth
2328016947citrate+growth
2328029806fumarate+growth
2328017859glutaric acid+growth
2328029991L-aspartate+growth
2328029985L-glutamate+growth
2328017203L-proline+growth
2328024996lactate+growth
2328025115malate+growth
2328015361pyruvate+growth
2328030031succinate+growth
2328028938ammonium+nitrogen source
2328030089acetate+/-growth
23280370543-hydroxybutyrate+/-growth
2328017895L-tyrosine+/-growth
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916024D-mannose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistantresistance conc.sensitivity conc.
2328018208penicillin gyesnoyes2 Unit (disc)
2328018208penicillin gyesyes10 Unit (disc)

metabolite production

@refChebi-IDmetaboliteproduction
2328035581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitecitrate testindole test
2328016947citrate+
6836935581indole-

enzymes

@refvalueactivityec
23280acid phosphatase+3.1.3.2
23280alkaline phosphatase+/-3.1.3.1
23280alpha-chymotrypsin+/-3.4.21.1
23280catalase+1.11.1.6
23280cytochrome oxidase-1.9.3.1
23280esterase (C 4)+
23280esterase lipase (C 8)+/-
23280L-leucyl-2-naphthylamide hydrolase+
23280phenylalanine deaminase-4.3.1.5
23280phosphoamidase+3.9.1.1
23280urease-3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4302----------------+/-+/-+++
4302----------------+/-+/-+++
4302---------+/--+/-----+++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
4302turkey, air sac exudateHannoverGermanyDEUEurope
46006Turkey poults respiratory tract (Air sac exudate)GermanyDEUEurope1977
116668Animal, Turkey, respiratory tractHanoverGermanyDEUEurope1977

isolation source categories

Cat1Cat2
#Host#Birds
#Host Body-Site#Oral cavity and airways
#Host Body Product#Fluids

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
4302yes2Risk group (German classification)
1166682Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bordetella avium ATCC 35086 16S rRNA, partial sequenceU049471464ena521
4302Bordetella avium 16S ribosomal RNA gene, complete sequenceAF1776661522ena521

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bordetella avium ATCC 35086GCA_003581385contigncbi521
66792Bordetella avium strain ATCC 35086521.38wgspatric521
66792Bordetella avium ATCC 350862916308423draftimg521

GC content

  • @ref: 23280
  • GC-content: 61.6
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.787yes
anaerobicno97.447yes
halophileno82.079no
spore-formingno94.825yes
glucose-utilno79.292no
aerobicyes86.75yes
thermophileno98.818yes
motileyes89.173yes
flagellatedyes75.123yes
glucose-fermentno88.632yes

External links

@ref: 4302

culture collection no.: DSM 11332, ATCC 35086, CCUG 13726, LMG 1852, Hinz 591-77, CIP 103348, NCTC 12033

straininfo link

  • @ref: 70057
  • straininfo: 1259

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4302Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11332)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11332
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23280K. Kersters, K.-H. Hinz, A. Hertle, P. Segers, A. Lievens, O. Siegmann, J. De Ley10.1099/00207713-34-1-56Bordetella avium sp. nov., Isolated from the Respiratory Tracts of Turkeys and Other BirdsIJSEM 34: 56-70 1984
40613Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15136
46006Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13726)https://www.ccug.se/strain?id=13726
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
70057Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1259.1StrainInfo: A central database for resolving microbial strain identifiers
116668Curators of the CIPCollection of Institut Pasteur (CIP 103348)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103348