Strain identifier

BacDive ID: 3765

Type strain: Yes

Species: Arcicella aquatica

Strain Designation: NO-502

Strain history: CIP <- 2003, W.R. Abraham, GBF, Braunschweig, Germany: strain NO-502

NCBI tax ID(s): 1121010 (strain), 217141 (species)

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General

@ref: 6754

BacDive-ID: 3765

DSM-Number: 17092

keywords: 16S sequence, Bacteria, aerobe, mesophilic, spiral-shaped

description: Arcicella aquatica NO-502 is an aerobe, mesophilic, spiral-shaped bacterium that was isolated from neuston film of a freshwater lake.

NCBI tax id

NCBI tax idMatching level
217141species
1121010strain

strain history

@refhistory
6754<- C. Strömpl, GBF <- W.-R. Abraham <- D. I. Nikitin; NO-502
116428CIP <- 2003, W.R. Abraham, GBF, Braunschweig, Germany: strain NO-502

doi: 10.13145/bacdive3765.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Spirosomataceae
  • genus: Arcicella
  • species: Arcicella aquatica
  • full scientific name: Arcicella aquatica Nikitin et al. 2004

@ref: 6754

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Spirosomaceae

genus: Arcicella

species: Arcicella aquatica

full scientific name: Arcicella aquatica Nikitin et al. 2004 emend. Chen et al. 2013

strain designation: NO-502

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapegram stainmotility
300642.75 µm0.575 µmspiral-shaped
116428rod-shapednegativeno

pigmentation

  • @ref: 30064
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6754ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)yeshttps://mediadive.dsmz.de/medium/7Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
33187MEDIUM 489 - for Arcocella aquaticayesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (1.000g);Yeast extract (1.000 g);Peptone (1.000 g)
116428CIP Medium 364yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=364

culture temp

@refgrowthtypetemperaturerange
6754positivegrowth30mesophilic
30064positivegrowth04-40
30064positiveoptimum29mesophilic
33187positivegrowth25mesophilic
116428positivegrowth5-25psychrophilic
116428nogrowth37mesophilic
116428nogrowth41thermophilic

culture pH

  • @ref: 30064
  • ability: positive
  • type: optimum
  • pH: 7

Physiology and metabolism

oxygen tolerance

  • @ref: 30064
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30064NaClpositivegrowth0.05-6.0 %
30064NaClpositiveoptimum3.025 %
116428NaClpositivegrowth0 %
116428NaClnogrowth2 %
116428NaClnogrowth4 %
116428NaClnogrowth6 %
116428NaClnogrowth8 %
116428NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3006430089acetate+carbon source
3006422599arabinose+carbon source
3006435391aspartate+carbon source
3006417057cellobiose+carbon source
3006428757fructose+carbon source
3006433984fucose+carbon source
3006428260galactose+carbon source
3006417234glucose+carbon source
3006425017leucine+carbon source
3006425115malate+carbon source
3006417306maltose+carbon source
3006429864mannitol+carbon source
30064506227N-acetylglucosamine+carbon source
3006426546rhamnose+carbon source
3006433942ribose+carbon source
3006430911sorbitol+carbon source
3006417992sucrose+carbon source
300644853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836817632nitrate-reduction
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
1164284853esculin+hydrolysis
11642817234glucose-fermentation
116428606565hippurate+hydrolysis
11642817716lactose-fermentation
11642817632nitrate-reduction
11642816301nitrite-reduction
116428132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 116428
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11642835581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole-
11642815688acetoin-
11642817234glucose-

enzymes

@refvalueactivityec
30064acid phosphatase+3.1.3.2
30064alkaline phosphatase+3.1.3.1
30064alpha-galactosidase+3.2.1.22
30064catalase+1.11.1.6
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
116428oxidase+
116428beta-galactosidase+3.2.1.23
116428alcohol dehydrogenase-1.1.1.1
116428gelatinase-
116428amylase+
116428DNase+
116428catalase+1.11.1.6
116428gamma-glutamyltransferase+2.3.2.2
116428lecithinase+
116428lipase-
116428lysine decarboxylase-4.1.1.18
116428ornithine decarboxylase-4.1.1.17
116428phenylalanine ammonia-lyase-4.3.1.24
116428protease+
116428tryptophan deaminase-
116428urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116428-+++-++-+-++++-+++-+

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUNO2N2
116428--------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116428-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116428------------------+--------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6754neuston film of a freshwater lakenear MoscowRussiaRUSEurope
116428Environment, FreshwaterRussian FederationRUSEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Host#Microbial

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
67541Risk group (German classification)
1164281Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6754
  • description: Arcocella aquatica 16S rRNA gene, type strain NO-502T
  • accession: AJ535729
  • length: 1460
  • database: ena
  • NCBI tax ID: 217141

GC content

  • @ref: 6754
  • GC-content: 34.5

External links

@ref: 6754

culture collection no.: DSM 17092, CIP 107990, LMG 21963

straininfo link

  • @ref: 73277
  • straininfo: 99867

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15143007Phylogeny of the ring-forming bacterium Arcicella aquatica gen. nov., sp. nov. (ex Nikitin et al. 1994), from a freshwater neuston biofilm.Nikitin DI, Strompl C, Oranskaya MS, Abraham WRInt J Syst Evol Microbiol10.1099/ijs.0.02896-02004Base Composition, Biofilms, Carbohydrate Metabolism, Cytophagaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genome, Bacterial, Lipids/analysis, Molecular Sequence Data, PhylogenyGenetics
Phylogeny20008110Siphonobacter aquaeclarae gen. nov., sp. nov., a novel member of the family 'Flexibacteraceae', phylum Bacteroidetes.Tancsics A, Keki Z, Marialigeti K, Schumann P, Toth EMInt J Syst Evol Microbiol10.1099/ijs.0.019398-02009Base Composition, Cytophagaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, Power Plants, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny20118286Arcicella aurantiaca sp. nov., isolated from stream water.Sheu SY, Yang CS, Chen MH, Arun AB, Young CC, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.021527-02010Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/chemistry, Water MicrobiologyGenetics
Phylogeny22368167Arcicella rigui sp. nov., isolated from water of a wetland, and emended descriptions of the genus Arcicella, Arcicella aquatica, Arcicella rosea and Arcicella aurantiaca.Chen WM, Yang SH, Young CC, Sheu SYInt J Syst Evol Microbiol10.1099/ijs.0.037242-02012Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, *Water Microbiology, WetlandsGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6754Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17092)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17092
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30064Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2642428776041
33187Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5562
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
73277Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID99867.1StrainInfo: A central database for resolving microbial strain identifiers
116428Curators of the CIPCollection of Institut Pasteur (CIP 107990)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107990