Strain identifier
BacDive ID: 375
Type strain:
Species: Bordetella bronchiseptica
Strain Designation: B-140
Strain history: CIP <- 1953, ATCC <- K.B. Rapper, NRRL: strain B-140
NCBI tax ID(s): 518 (species)
General
@ref: 3892
BacDive-ID: 375
DSM-Number: 10303
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, human pathogen
description: Bordetella bronchiseptica B-140 is an aerobe, mesophilic, motile human pathogen of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 518
- Matching level: species
strain history
@ref | history |
---|---|
3892 | <- ATCC; ATCC 4617 <- NRRL; B-140 <- W. A. Hagan; (Brucella bronchiseptica) <- F. Breed; |
117058 | CIP <- 1953, ATCC <- K.B. Rapper, NRRL: strain B-140 |
doi: 10.13145/bacdive375.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella bronchiseptica
- full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus bronchisepticus
@ref: 3892
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella bronchiseptica
full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952
strain designation: B-140
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 93.442 | ||
69480 | 99.992 | negative | ||
117058 | no | negative | rod-shaped |
colony morphology
@ref | incubation period | hemolysis ability |
---|---|---|
3892 | 1-2 days | |
117058 | 1 |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
34207 | MEDIUM 440 - for Bordetella | yes | Distilled water make up to (1000.000 ml);Glycerol (10.000 ml);Bordet gengou agar (30.000 g);Sheep blood (200.000 ml) | |
3892 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf | |
3892 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
117058 | CIP Medium 440 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=440 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3892 | positive | growth | 37 | mesophilic |
34207 | positive | growth | 30 | mesophilic |
44557 | positive | growth | 37 | mesophilic |
117058 | positive | growth | 15-41 | |
117058 | no | growth | 5 | psychrophilic |
117058 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44557 | aerobe |
117058 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.921 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
117058 | NaCl | positive | growth | 0-6 % |
117058 | NaCl | no | growth | 8 % |
117058 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
117058 | 16947 | citrate | + | carbon source |
117058 | 4853 | esculin | - | hydrolysis |
117058 | 606565 | hippurate | + | hydrolysis |
117058 | 17632 | nitrate | - | builds gas from |
117058 | 17632 | nitrate | + | reduction |
117058 | 16301 | nitrite | - | builds gas from |
117058 | 16301 | nitrite | - | reduction |
117058 | 35020 | tributyrin | - | hydrolysis |
117058 | 15792 | malonate | - | assimilation |
117058 | 17632 | nitrate | - | respiration |
68377 | 17634 | D-glucose | - | builds acid from |
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | - | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 16199 | urea | + | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
antibiotic resistance
- @ref: 117058
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | no |
68369 | 35581 | indole | no |
117058 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68377 | 35581 | indole | - | ||
68369 | 35581 | indole | - | ||
117058 | 15688 | acetoin | - | ||
117058 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
3892 | catalase | + | 1.11.1.6 |
3892 | cytochrome-c oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | beta-galactosidase | - | 3.2.1.23 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | urease | + | 3.5.1.5 |
68377 | beta-lactamase | - | 3.5.2.6 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
117058 | oxidase | + | |
117058 | beta-galactosidase | - | 3.2.1.23 |
117058 | alcohol dehydrogenase | - | 1.1.1.1 |
117058 | gelatinase | - | |
117058 | amylase | - | |
117058 | DNase | - | |
117058 | caseinase | - | 3.4.21.50 |
117058 | catalase | + | 1.11.1.6 |
117058 | tween esterase | - | |
117058 | gamma-glutamyltransferase | + | 2.3.2.2 |
117058 | lecithinase | - | |
117058 | lipase | - | |
117058 | lysine decarboxylase | - | 4.1.1.18 |
117058 | ornithine decarboxylase | - | 4.1.1.17 |
117058 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
117058 | protease | - | |
117058 | tryptophan deaminase | - | |
117058 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117058 | - | + | + | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3892 | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + |
3892 | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + |
3892 | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3892 | - | - | - | - | - | + | + | - | - | - | + | - | - |
3892 | - | - | - | - | - | - | + | + | - | - | - | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117058 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_12.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_11;99_12&stattab=map
- Last taxonomy: Bordetella pertussis
- 16S sequence: AJ278452
- Sequence Identity:
- Total samples: 23163
- soil counts: 4730
- aquatic counts: 9586
- animal counts: 5464
- plant counts: 3383
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
3892 | yes | yes | 2 | Risk group (German classification) |
117058 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 3892
- description: Bordetella bronchiseptica partial 16S rRNA gene, strain DSM 10303
- accession: AJ278452
- length: 1523
- database: ena
- NCBI tax ID: 518
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bordetella bronchiseptica strain NCTC8344 | 518.72 | complete | patric | 518 |
66792 | Bordetella bronchiseptica NCTC8344 | GCA_900637995 | complete | ncbi | 518 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 50.69 | no |
gram-positive | no | 98.164 | no |
anaerobic | no | 98.964 | yes |
aerobic | yes | 87.06 | yes |
halophile | no | 81.796 | no |
spore-forming | no | 94.366 | no |
thermophile | no | 99.498 | yes |
glucose-util | no | 80.358 | no |
motile | yes | 88.331 | no |
glucose-ferment | no | 91.243 | no |
External links
@ref: 3892
culture collection no.: CCUG 2514, NRRL B-140, DSM 10303, ATCC 4617, NCIB 9935, NCTC 8344, PCI 1701, WHO 11, CIP 53.157, NCIMB 9935
straininfo link
- @ref: 70055
- straininfo: 36084
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 2490093 | Flow microcalorimetric assay of antibiotics--I. Polymyxin B sulphate and its combinations with neomycin sulphate and zinc bacitracin on interaction with Bordetella bronchiseptica (NCTC 8344). | Joslin Kjeldsen N, Beezer AE, Miles RJ | J Pharm Biomed Anal | 10.1016/0731-7085(89)80005-6 | 1989 | Bacitracin/*analysis/pharmacology, Biological Assay, Bordetella/*drug effects, Calorimetry/methods, Drug Therapy, Combination/analysis/pharmacology, Microbial Sensitivity Tests, Neomycin/*analysis/pharmacology, Polymyxin B/*analysis/pharmacology | |
Enzymology | 2490572 | Residue determination of two co-administered antibacterial agents--cephalexin and colistin--in calf tissues using high-performance liquid chromatography and microbiological methods. | Leroy P, Decolin D, Nicolas S, Archimbault P, Nicolas A | J Pharm Biomed Anal | 10.1016/0731-7085(89)80201-8 | 1989 | Adipose Tissue/chemistry, Animals, Biological Assay, Bordetella/drug effects, Cattle, Cephalexin/*analysis/pharmacokinetics/pharmacology, Chromatography, High Pressure Liquid, Colistin/*analysis/pharmacokinetics/pharmacology, Diffusion, Drug Residues/*analysis, Electrochemistry, Indicators and Reagents, Kidney/chemistry, Liver/chemistry, Muscles/chemistry, Spectrophotometry, Ultraviolet, o-Phthalaldehyde | Pathogenicity |
Genetics | 9163480 | Molecular characterization of two Bordetella bronchiseptica strains isolated from children with coughs. | Stefanelli P, Mastrantonio P, Hausman SZ, Giuliano M, Burns DL | J Clin Microbiol | 10.1128/jcm.35.6.1550-1555.1997 | 1997 | Acute Disease, Adenylyl Cyclases/analysis, Adhesins, Bacterial/analysis, Base Sequence, Bordetella Infections/*microbiology, Bordetella bronchiseptica/chemistry/drug effects/*genetics/*isolation & purification, Clinical Trials as Topic, Cough/*microbiology, DNA, Bacterial/analysis/genetics, Electrophoresis, Gel, Pulsed-Field, Flagellin/analysis, Gene Expression Regulation, Bacterial/genetics, Genes, Bacterial/genetics, Genetic Variation/genetics, Hemagglutinins/analysis, Humans, Immune Sera, Infant, Molecular Sequence Data, *Pertussis Toxin, Pertussis Vaccine, Promoter Regions, Genetic/genetics, Sequence Analysis, DNA, Virulence Factors, Bordetella/*analysis/genetics | Enzymology |
27487509 | Occurence of Bordetella bronchiseptica in domestic cats with upper respiratory tract infections. | Garbal M, Adaszek L, Lyp P, Frymus J, Winiarczyk M, Winiarczyk S | Pol J Vet Sci | 10.1515/pjvs-2016-0043 | 2016 | Animals, Base Sequence, Bordetella Infections/microbiology/*veterinary, *Bordetella bronchiseptica/genetics, Cat Diseases/*microbiology, Cats, Female, Genetic Variation, Male, Respiratory Tract Infections/microbiology/*veterinary | ||
Pathogenicity | 35209141 | Synthesis, Characterization, Biological Evaluation and DNA Interaction Studies of 4-Aminophenol Derivatives: Theoretical and Experimental Approach. | Rafique B, Kalsoom S, Sajini AA, Ismail H, Iqbal M | Molecules | 10.3390/molecules27041352 | 2022 | Aminophenols/*chemical synthesis/chemistry/*pharmacology, Anti-Infective Agents/chemical synthesis/chemistry/pharmacology, Binding Sites, Chemistry Techniques, Synthetic, DNA/*chemistry/metabolism, Humans, Hypoglycemic Agents/chemistry/pharmacology, Microbial Sensitivity Tests, Molecular Conformation, Molecular Docking Simulation, Molecular Dynamics Simulation, Molecular Structure, Protein Binding, Schiff Bases/chemistry, Spectrum Analysis, Structure-Activity Relationship | Metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3892 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10303) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10303 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
34207 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17011 | ||
44557 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 2514) | https://www.ccug.se/strain?id=2514 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68369 | Automatically annotated from API 20NE | |||
68377 | Automatically annotated from API NH | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
70055 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36084.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
117058 | Curators of the CIP | Collection of Institut Pasteur (CIP 53.157) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.157 |