Strain identifier

BacDive ID: 375

Type strain: No

Species: Bordetella bronchiseptica

Strain Designation: B-140

Strain history: CIP <- 1953, ATCC <- K.B. Rapper, NRRL: strain B-140

NCBI tax ID(s): 518 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3892

BacDive-ID: 375

DSM-Number: 10303

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, human pathogen

description: Bordetella bronchiseptica B-140 is an aerobe, mesophilic, motile human pathogen of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 518
  • Matching level: species

strain history

@refhistory
3892<- ATCC; ATCC 4617 <- NRRL; B-140 <- W. A. Hagan; (Brucella bronchiseptica) <- F. Breed;
117058CIP <- 1953, ATCC <- K.B. Rapper, NRRL: strain B-140

doi: 10.13145/bacdive375.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella bronchiseptica
  • full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus bronchisepticus

@ref: 3892

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella bronchiseptica

full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952

strain designation: B-140

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes93.442
6948099.992negative
117058nonegativerod-shaped

colony morphology

@refincubation periodhemolysis ability
38921-2 days
1170581

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34207MEDIUM 440 - for BordetellayesDistilled water make up to (1000.000 ml);Glycerol (10.000 ml);Bordet gengou agar (30.000 g);Sheep blood (200.000 ml)
3892COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
3892TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
117058CIP Medium 440yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=440

culture temp

@refgrowthtypetemperaturerange
3892positivegrowth37mesophilic
34207positivegrowth30mesophilic
44557positivegrowth37mesophilic
117058positivegrowth15-41
117058nogrowth5psychrophilic
117058nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44557aerobe
117058obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.921

halophily

@refsaltgrowthtested relationconcentration
117058NaClpositivegrowth0-6 %
117058NaClnogrowth8 %
117058NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836927897tryptophan-energy source
6836917632nitrate+reduction
11705816947citrate+carbon source
1170584853esculin-hydrolysis
117058606565hippurate+hydrolysis
11705817632nitrate-builds gas from
11705817632nitrate+reduction
11705816301nitrite-builds gas from
11705816301nitrite-reduction
11705835020tributyrin-hydrolysis
11705815792malonate-assimilation
11705817632nitrate-respiration
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837716199urea+hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 117058
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno
11705835581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837735581indole-
6836935581indole-
11705815688acetoin-
11705817234glucose-

enzymes

@refvalueactivityec
3892catalase+1.11.1.6
3892cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377urease+3.5.1.5
68377beta-lactamase-3.5.2.6
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
117058oxidase+
117058beta-galactosidase-3.2.1.23
117058alcohol dehydrogenase-1.1.1.1
117058gelatinase-
117058amylase-
117058DNase-
117058caseinase-3.4.21.50
117058catalase+1.11.1.6
117058tween esterase-
117058gamma-glutamyltransferase+2.3.2.2
117058lecithinase-
117058lipase-
117058lysine decarboxylase-4.1.1.18
117058ornithine decarboxylase-4.1.1.17
117058phenylalanine ammonia-lyase-4.3.1.24
117058protease-
117058tryptophan deaminase-
117058urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117058-++--+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
3892+-+-+-----------+++++
3892+---+-----------+++++
3892+---+-----------+++++

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
3892-----++---+--
3892------++---+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117058--------------------------------------------------+--+----------------------------------+----------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_12.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_11;99_12&stattab=map
  • Last taxonomy: Bordetella pertussis
  • 16S sequence: AJ278452
  • Sequence Identity:
  • Total samples: 23163
  • soil counts: 4730
  • aquatic counts: 9586
  • animal counts: 5464
  • plant counts: 3383

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
3892yesyes2Risk group (German classification)
1170582Risk group (French classification)

Sequence information

16S sequences

  • @ref: 3892
  • description: Bordetella bronchiseptica partial 16S rRNA gene, strain DSM 10303
  • accession: AJ278452
  • length: 1523
  • database: ena
  • NCBI tax ID: 518

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bordetella bronchiseptica strain NCTC8344518.72completepatric518
66792Bordetella bronchiseptica NCTC8344GCA_900637995completencbi518

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes50.69no
gram-positiveno98.164no
anaerobicno98.964yes
aerobicyes87.06yes
halophileno81.796no
spore-formingno94.366no
thermophileno99.498yes
glucose-utilno80.358no
motileyes88.331no
glucose-fermentno91.243no

External links

@ref: 3892

culture collection no.: CCUG 2514, NRRL B-140, DSM 10303, ATCC 4617, NCIB 9935, NCTC 8344, PCI 1701, WHO 11, CIP 53.157, NCIMB 9935

straininfo link

  • @ref: 70055
  • straininfo: 36084

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity2490093Flow microcalorimetric assay of antibiotics--I. Polymyxin B sulphate and its combinations with neomycin sulphate and zinc bacitracin on interaction with Bordetella bronchiseptica (NCTC 8344).Joslin Kjeldsen N, Beezer AE, Miles RJJ Pharm Biomed Anal10.1016/0731-7085(89)80005-61989Bacitracin/*analysis/pharmacology, Biological Assay, Bordetella/*drug effects, Calorimetry/methods, Drug Therapy, Combination/analysis/pharmacology, Microbial Sensitivity Tests, Neomycin/*analysis/pharmacology, Polymyxin B/*analysis/pharmacology
Enzymology2490572Residue determination of two co-administered antibacterial agents--cephalexin and colistin--in calf tissues using high-performance liquid chromatography and microbiological methods.Leroy P, Decolin D, Nicolas S, Archimbault P, Nicolas AJ Pharm Biomed Anal10.1016/0731-7085(89)80201-81989Adipose Tissue/chemistry, Animals, Biological Assay, Bordetella/drug effects, Cattle, Cephalexin/*analysis/pharmacokinetics/pharmacology, Chromatography, High Pressure Liquid, Colistin/*analysis/pharmacokinetics/pharmacology, Diffusion, Drug Residues/*analysis, Electrochemistry, Indicators and Reagents, Kidney/chemistry, Liver/chemistry, Muscles/chemistry, Spectrophotometry, Ultraviolet, o-PhthalaldehydePathogenicity
Genetics9163480Molecular characterization of two Bordetella bronchiseptica strains isolated from children with coughs.Stefanelli P, Mastrantonio P, Hausman SZ, Giuliano M, Burns DLJ Clin Microbiol10.1128/jcm.35.6.1550-1555.19971997Acute Disease, Adenylyl Cyclases/analysis, Adhesins, Bacterial/analysis, Base Sequence, Bordetella Infections/*microbiology, Bordetella bronchiseptica/chemistry/drug effects/*genetics/*isolation & purification, Clinical Trials as Topic, Cough/*microbiology, DNA, Bacterial/analysis/genetics, Electrophoresis, Gel, Pulsed-Field, Flagellin/analysis, Gene Expression Regulation, Bacterial/genetics, Genes, Bacterial/genetics, Genetic Variation/genetics, Hemagglutinins/analysis, Humans, Immune Sera, Infant, Molecular Sequence Data, *Pertussis Toxin, Pertussis Vaccine, Promoter Regions, Genetic/genetics, Sequence Analysis, DNA, Virulence Factors, Bordetella/*analysis/geneticsEnzymology
27487509Occurence of Bordetella bronchiseptica in domestic cats with upper respiratory tract infections.Garbal M, Adaszek L, Lyp P, Frymus J, Winiarczyk M, Winiarczyk SPol J Vet Sci10.1515/pjvs-2016-00432016Animals, Base Sequence, Bordetella Infections/microbiology/*veterinary, *Bordetella bronchiseptica/genetics, Cat Diseases/*microbiology, Cats, Female, Genetic Variation, Male, Respiratory Tract Infections/microbiology/*veterinary
Pathogenicity35209141Synthesis, Characterization, Biological Evaluation and DNA Interaction Studies of 4-Aminophenol Derivatives: Theoretical and Experimental Approach.Rafique B, Kalsoom S, Sajini AA, Ismail H, Iqbal MMolecules10.3390/molecules270413522022Aminophenols/*chemical synthesis/chemistry/*pharmacology, Anti-Infective Agents/chemical synthesis/chemistry/pharmacology, Binding Sites, Chemistry Techniques, Synthetic, DNA/*chemistry/metabolism, Humans, Hypoglycemic Agents/chemistry/pharmacology, Microbial Sensitivity Tests, Molecular Conformation, Molecular Docking Simulation, Molecular Dynamics Simulation, Molecular Structure, Protein Binding, Schiff Bases/chemistry, Spectrum Analysis, Structure-Activity RelationshipMetabolism

Reference

@idauthorscataloguedoi/urltitle
3892Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10303)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10303
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34207Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17011
44557Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 2514)https://www.ccug.se/strain?id=2514
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70055Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36084.1StrainInfo: A central database for resolving microbial strain identifiers
117058Curators of the CIPCollection of Institut Pasteur (CIP 53.157)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.157