Strain identifier
BacDive ID: 3708
Type strain: 
Species: Stigmatella erecta
Strain Designation: M26
Strain history: <- ATCC <- McCurdy; M26
NCBI tax ID(s): 83460 (species)
version 8.1 (current version)
General
@ref: 6637
BacDive-ID: 3708
DSM-Number: 16858
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Stigmatella erecta M26 is a mesophilic bacterium that was isolated from poplar bark.
NCBI tax id
- NCBI tax id: 83460
- Matching level: species
strain history
- @ref: 6637
- history: <- ATCC <- McCurdy; M26
doi: 10.13145/bacdive3708.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Archangiaceae
- genus: Stigmatella
- species: Stigmatella erecta
- full scientific name: Stigmatella erecta (Schroeter 1886) McCurdy 1971 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Cystobacter erectus
@ref: 6637
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Archangiaceae
genus: Stigmatella
species: Stigmatella erecta
full scientific name: Stigmatella erecta (Schroeter 1886) McCurdy 1971
strain designation: M26
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6637
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 6637
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 6637
- sample type: poplar bark
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Bark |
taxonmaps
- @ref: 69479
- File name: preview.99_5311.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_2503;98_3958;99_5311&stattab=map
- Last taxonomy: Stigmatella
- 16S sequence: KF267737
- Sequence Identity:
- Total samples: 19328
- soil counts: 13615
- aquatic counts: 2171
- animal counts: 1422
- plant counts: 2120
Safety information
risk assessment
- @ref: 6637
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Stigmatella erecta strain ATCC 25191 16S ribosomal RNA gene, partial sequence | DQ768128 | 1502 | ena | 83460 |
| 20218 | Stigmatella erecta strain DSM 16858 16S ribosomal RNA gene, partial sequence | KF267737 | 1502 | ena | 83460 |
| 6637 | Stigmatella erecta partial 16S rRNA gene, type strain DSM 16858T | AJ970180 | 1534 | ena | 83460 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Stigmatella erecta DSM 16858 | GCA_900111745 | contig | ncbi | 83460 |
| 66792 | Stigmatella erecta strain DSM 16858 | 83460.3 | wgs | patric | 83460 |
| 66792 | Stigmatella erecta DSM 16858 | 2693429888 | draft | img | 83460 |
GC content
- @ref: 6637
- GC-content: 68.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 53.82 | no |
| flagellated | no | 86.648 | no |
| gram-positive | no | 94.457 | no |
| anaerobic | no | 99.074 | no |
| halophile | no | 91.221 | no |
| spore-forming | no | 79.573 | no |
| thermophile | no | 98.714 | yes |
| glucose-util | yes | 81.214 | no |
| aerobic | yes | 75.313 | no |
| glucose-ferment | no | 87.914 | no |
External links
@ref: 6637
culture collection no.: DSM 16858, ATCC 25191
straininfo link
- @ref: 73220
- straininfo: 38403
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6637 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16858) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16858 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73220 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38403.1 | StrainInfo: A central database for resolving microbial strain identifiers |