Strain identifier
BacDive ID: 37
Type strain: 
Species: Asaia prunellae
Strain Designation: T-153
Strain history: TUA 1310B <-- T. Uchimura T-153.
NCBI tax ID(s): 1236502 (strain), 610245 (species)
version 8.1 (current version)
General
@ref: 16658
BacDive-ID: 37
DSM-Number: 23028
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Asaia prunellae T-153 is a mesophilic, Gram-negative bacterium that was isolated from self-heal Prunella vulgaris.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 610245 | species |
| 1236502 | strain |
strain history
| @ref | history |
|---|---|
| 16658 | <- T. Uchimura, Dept. Applied Biology and Chemistry, Tokyo Univ. Agriculture, Japan; T-153 <- R. Suzuki |
| 67770 | TUA 1310B <-- T. Uchimura T-153. |
doi: 10.13145/bacdive37.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Asaia
- species: Asaia prunellae
- full scientific name: Asaia prunellae Suzuki et al. 2012
@ref: 16658
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Asaia
species: Asaia prunellae
full scientific name: Asaia prunellae Suzuki et al. 2012
strain designation: T-153
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.976
Culture and growth conditions
culture medium
- @ref: 16658
- name: ASAIA GYP MEDIUM (DSMZ Medium 1330)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1330
- composition: Name: ASAIA GYP MEDIUM (DSMZ Medium 1330) Composition: Agar 15.0 g/l Peptone 10.0 g/l Glycerol 10.0 g/l Glucose 10.0 g/l CaCO3 7.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16658 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 16658 | self-heal Prunella vulgaris | Prunella vulgaris | Akita | Japan | JPN | Asia |
| 67770 | Self-heal (Prunella vulgaris) | Prunella vulgaris | Akita | Japan | JPN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_4348.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_661;97_765;98_3270;99_4348&stattab=map
- Last taxonomy: Asaia
- 16S sequence: AB485741
- Sequence Identity:
- Total samples: 21825
- soil counts: 6137
- aquatic counts: 4167
- animal counts: 6615
- plant counts: 4906
Safety information
risk assessment
- @ref: 16658
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16658
- description: Asaia prunellae gene for 16S rRNA, partial sequence, strain: T-153
- accession: AB485741
- length: 1417
- database: ena
- NCBI tax ID: 1236502
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Asaia prunellae JCM 25354 | 1236502.5 | wgs | patric | 1236502 |
| 66792 | Asaia prunellae JCM 25354 | 2585427933 | draft | img | 1236502 |
| 67770 | Asaia prunellae JCM 25354 | GCA_000613885 | contig | ncbi | 1236502 |
GC content
- @ref: 16658
- GC-content: 58.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 65.386 | no |
| gram-positive | no | 97.244 | no |
| anaerobic | no | 98.792 | no |
| aerobic | yes | 93.22 | no |
| halophile | no | 92.847 | no |
| spore-forming | no | 94.013 | no |
| glucose-util | yes | 92.919 | no |
| flagellated | no | 78.95 | no |
| thermophile | no | 98.414 | yes |
| glucose-ferment | no | 84.493 | no |
External links
@ref: 16658
culture collection no.: DSM 23028, JCM 25354
straininfo link
- @ref: 69722
- straininfo: 376897
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16658 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23028) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23028 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 69722 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID376897.1 | StrainInfo: A central database for resolving microbial strain identifiers |