Strain identifier
BacDive ID: 3685
Type strain: 
Species: Stigmatella aurantiaca
Strain Designation: M 15
Strain history: <- ATCC <- H. D. McCurdy; M 15
NCBI tax ID(s): 41 (species)
version 8.1 (current version)
General
@ref: 6705
BacDive-ID: 3685
DSM-Number: 17044
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Stigmatella aurantiaca M 15 is a mesophilic, Gram-negative bacterium that was isolated from bark.
NCBI tax id
- NCBI tax id: 41
- Matching level: species
strain history
- @ref: 6705
- history: <- ATCC <- H. D. McCurdy; M 15
doi: 10.13145/bacdive3685.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Archangiaceae
- genus: Stigmatella
- species: Stigmatella aurantiaca
- full scientific name: Stigmatella aurantiaca Berkeley and Curtis 1875 (Approved Lists 1980)
@ref: 6705
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Archangiaceae
genus: Stigmatella
species: Stigmatella aurantiaca
full scientific name: Stigmatella aurantiaca Berkeley and Curtis 1875
strain designation: M 15
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.902
Culture and growth conditions
culture medium
- @ref: 6705
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 6705
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 94.019
Isolation, sampling and environmental information
isolation
- @ref: 6705
- sample type: bark
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Plant | #Bark |
| #Host | #Plants | |
| #Host | #Plants | #Tree |
taxonmaps
- @ref: 69479
- File name: preview.99_5311.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_2503;98_3958;99_5311&stattab=map
- Last taxonomy: Stigmatella
- 16S sequence: KF267736
- Sequence Identity:
- Total samples: 19328
- soil counts: 13615
- aquatic counts: 2171
- animal counts: 1422
- plant counts: 2120
Safety information
risk assessment
- @ref: 6705
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Stigmatella aurantiaca strain ATCC 25190 16S ribosomal RNA gene, partial sequence | DQ768127 | 1502 | ena | 41 |
| 20218 | Stigmatella aurantiaca strain DSM 17044 16S ribosomal RNA gene, complete sequence | GU207882 | 1548 | ena | 41 |
| 20218 | Stigmatella aurantiaca strain DSM 17044 16S ribosomal RNA gene, partial sequence | KF267736 | 1502 | ena | 41 |
| 6705 | Stigmatella aurantiaca 16S ribosomal RNA gene, complete sequence | M94281 | 1552 | ena | 41 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Stigmatella aurantiaca DSM 17044 | GCA_900109545 | contig | ncbi | 41 |
| 66792 | Stigmatella aurantiaca strain DSM 17044 | 41.8 | wgs | patric | 41 |
| 66792 | Stigmatella aurantiaca DSM 17044 | 2693429895 | draft | img | 41 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 66 | no |
| gram-positive | no | 94.225 | no |
| anaerobic | no | 99.097 | no |
| halophile | no | 88.784 | no |
| spore-forming | no | 78.953 | no |
| glucose-util | yes | 80.716 | no |
| aerobic | yes | 73.215 | no |
| flagellated | no | 86.569 | no |
| motile | no | 52.487 | no |
| thermophile | no | 98.361 | yes |
| glucose-ferment | no | 87.061 | no |
External links
@ref: 6705
culture collection no.: DSM 17044, ATCC 25190
straininfo link
- @ref: 73197
- straininfo: 38402
literature
- topic: Metabolism
- Pubmed-ID: 24058653
- title: Characterization of four type IV pilin homologues in Stigmatella aurantiaca DSM17044 by heterologous expression in Myxococcus xanthus.
- authors: Tan Z, Li H, Pan H, Zhou X, Liu X, Luo N, Hu W, Li Y
- journal: PLoS One
- DOI: 10.1371/journal.pone.0075105
- year: 2013
- mesh: Fimbriae Proteins/*biosynthesis/genetics, *Gene Expression, Myxococcus xanthus/genetics/*metabolism, Recombinant Proteins/biosynthesis/genetics, Stigmatella aurantiaca/genetics/*metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6705 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17044) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17044 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 73197 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38402.1 | StrainInfo: A central database for resolving microbial strain identifiers |