Strain identifier

BacDive ID: 368

Type strain: Yes

Species: Bordetella parapertussis

Strain Designation: 522

Strain history: CIP <- 1964, NCTC, Acinetobacter parapertussis <- H.B. Maitland <- G. Eldering and P. Kendrick: strain 522

NCBI tax ID(s): 519 (species)

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General

@ref: 5043

BacDive-ID: 368

DSM-Number: 13415

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, human pathogen

description: Bordetella parapertussis 522 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from patient with whooping cough.

NCBI tax id

  • NCBI tax id: 519
  • Matching level: species

strain history

@refhistory
5043<- CCUG <- NCTC <- H. B. Maitland <- G. Eldering and P. Kendrick; 522
121584CIP <- 1964, NCTC, Acinetobacter parapertussis <- H.B. Maitland <- G. Eldering and P. Kendrick: strain 522

doi: 10.13145/bacdive368.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella parapertussis
  • full scientific name: Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus parapertussis

@ref: 5043

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella parapertussis

full scientific name: Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952

strain designation: 522

type strain: yes

Morphology

cell morphology

  • @ref: 121584
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 121584

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5043BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438)yeshttps://mediadive.dsmz.de/medium/438Name: BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438) Composition: Horse blood 150.0 g/l Bordet-Gengou-Agar-Base
5043COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5043BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40899MEDIUM 21 - for BordetellayesDistilled water make up to (1000.000 ml);Horse blood (250.000 ml);Bordetgengou agar (30.000 g)
121584CIP Medium 21yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=21

culture temp

@refgrowthtypetemperaturerange
5043positivegrowth37mesophilic
40899positivegrowth37mesophilic
44193positivegrowth37mesophilic
121584positivegrowth25-37mesophilic
121584nogrowth5psychrophilic
121584nogrowth15psychrophilic
121584nogrowth41thermophilic
121584nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44193aerobe
121584obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
121584NaClpositivegrowth0-2 %
121584NaClnogrowth4 %
121584NaClnogrowth6 %
121584NaClnogrowth8 %
121584NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12158416947citrate-carbon source
1215844853esculin-hydrolysis
121584606565hippurate-hydrolysis
12158417632nitrate-reduction
12158416301nitrite-reduction
12158415792malonate-assimilation
12158417234glucose-degradation
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea+hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan-energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837716199urea+hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 121584
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6837435581indoleno
6836935581indoleno
12158435581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837735581indole-
6837435581indole-
6836935581indole-
12158415688acetoin-
12158417234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377urease+3.5.1.5
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease+3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
121584oxidase-
121584beta-galactosidase-3.2.1.23
121584alcohol dehydrogenase-1.1.1.1
121584gelatinase-
121584amylase-
121584DNase-
121584caseinase-3.4.21.50
121584catalase+1.11.1.6
121584gamma-glutamyltransferase+2.3.2.2
121584lecithinase-
121584lipase-
121584lysine decarboxylase-4.1.1.18
121584ornithine decarboxylase-4.1.1.17
121584phenylalanine ammonia-lyase-4.3.1.24
121584tryptophan deaminase-
121584urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44193C14:05.614
    44193C15:00.515
    44193C16:039.216
    44193C17:01.317
    44193C18:04.818
    44193C10:0 3OH2.111.423
    44193C16:1 ω7c7.115.819
    44193C17:0 CYCLO37.916.888
    44193C18:1 ω7c /12t/9t0.417.824
    44193C18:2 ω6,9c/C18:0 ANTE117.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121584--++------++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5043----+---+---------+--

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
44193---+----+-----------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
5043+/-----++---+--
5043------+++--+-
5043-+/-----++---+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121584----------------------------------------------------------------------+--+-------------------------

Isolation, sampling and environmental information

isolation

@refsample type
5043patient with whooping cough
44193Whooping cough
121584Whooping cough

isolation source categories

Cat1Cat2
#Infection#Disease
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_12.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_11;99_12&stattab=map
  • Last taxonomy: Bordetella pertussis
  • 16S sequence: U04949
  • Sequence Identity:
  • Total samples: 23163
  • soil counts: 4730
  • aquatic counts: 9586
  • animal counts: 5464
  • plant counts: 3383

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
5043yesyes2Risk group (German classification)
1215842Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5043
  • description: Bordetella parapertussis ATCC 15311 16S rRNA, partial sequence
  • accession: U04949
  • length: 1464
  • database: ena
  • NCBI tax ID: 519

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bordetella parapertussis NCTC5952GCA_900445785contigncbi519
66792Bordetella parapertussis strain NCTC 5952519.3completepatric519
66792Bordetella parapertussis strain NCTC5952519.18wgspatric519
66792Bordetella parapertussis NCTC 59522811995279draftimg519
66792Bordetella parapertussis NCTC 59522773857998draftimg519
66792Bordetella parapertussis strain FDAARGOS_1541519.102completepatric519
66792Bordetella parapertussis strain FDAARGOS_1541519.100completepatric519

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.951no
anaerobicno98.901no
halophileno81.373no
spore-formingno94.048no
glucose-utilno80.145yes
aerobicyes88.041yes
thermophileno99.422yes
motileyes88.684no
flagellatedyes51.812no
glucose-fermentno90.845yes

External links

@ref: 5043

culture collection no.: DSM 13415, ATCC 15311, CCUG 413, LMG 14449, NCTC 5952, CIP 64.11, LMG 1831

straininfo link

  • @ref: 70048
  • straininfo: 389264

literature

  • topic: Genetics
  • Pubmed-ID: 9524276
  • title: Characterisation of the urease gene cluster in Bordetella bronchiseptica.
  • authors: McMillan DJ, Mau M, Walker MJ
  • journal: Gene
  • DOI: 10.1016/s0378-1119(97)00651-3
  • year: 1998
  • mesh: Amino Acid Sequence, Base Sequence, Binding Sites, Bordetella bronchiseptica/*enzymology/*genetics, *Genes, Bacterial, Genes, Regulator, Molecular Sequence Data, *Multigene Family, Nickel/metabolism, Open Reading Frames, Operon, Sequence Alignment, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Urease/biosynthesis/chemistry/*genetics
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
5043Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13415)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13415
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40899Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10111
44193Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 413)https://www.ccug.se/strain?id=413
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68374Automatically annotated from API ID32E
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70048Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389264.1StrainInfo: A central database for resolving microbial strain identifiers
121584Curators of the CIPCollection of Institut Pasteur (CIP 64.11)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2064.11