Strain identifier

BacDive ID: 3670

Type strain: Yes

Species: Melittangium boletus

Strain Designation: Me b8

Strain history: DSM 14713 <-- H. Reichenbach Me b8.

NCBI tax ID(s): 1294270 (strain), 83453 (species)

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General

@ref: 5498

BacDive-ID: 3670

DSM-Number: 14713

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Melittangium boletus Me b8 is a mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from soil with rotting wood.

NCBI tax id

NCBI tax idMatching level
83453species
1294270strain

strain history

@refhistory
5498<- H. Reichenbach; Me b8
67770DSM 14713 <-- H. Reichenbach Me b8.

doi: 10.13145/bacdive3670.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Archangiaceae
  • genus: Melittangium
  • species: Melittangium boletus
  • full scientific name: Melittangium boletus Jahn 1924 (Approved Lists 1980)

@ref: 5498

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Archangiaceae

genus: Melittangium

species: Melittangium boletus

full scientific name: Melittangium boletus Jahn 1924

strain designation: Me b8

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.84

multicellular morphology

  • @ref: 18281
  • forms multicellular complex: yes
  • complex name: fruiting body

multimedia

  • @ref: 5498
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14713.jpg
  • caption: fruiting bodies on agar medium 9
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5498AGAR WITH E. COLI AS FEED (DSMZ Medium 942)yeshttps://mediadive.dsmz.de/medium/942Name: AGAR WITH E. COLI AS FEED (DSMZ Medium 942) Composition: Agar 15.0 g/l CaCl2 x 2 H2O 1.0 g/l Distilled water
5498VY/2 AGAR (DSMZ Medium 9)yeshttps://mediadive.dsmz.de/medium/9Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5498positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.673

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5498soil with rotting woodUttar PradeshIndiaINDAsia
67770Soil with raw humus, Rotting wood, bark and white marl from swampy regionIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Decomposing plant
#Host Body Product#Plant#Timber

taxonmaps

  • @ref: 69479
  • File name: preview.99_135632.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_958;98_1127;99_135632&stattab=map
  • Last taxonomy: Archangiaceae
  • 16S sequence: AJ233908
  • Sequence Identity:
  • Total samples: 750
  • soil counts: 441
  • aquatic counts: 56
  • animal counts: 82
  • plant counts: 171

Safety information

risk assessment

  • @ref: 5498
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Melittangium boletus strain DSM 14713 16S ribosomal RNA gene, partial sequenceDQ7681251491ena83453
5498Melittangium boletus 16S rRNA gene, strain Me b8AJ2339081520ena1294270

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Melittangium boletus DSM 14713GCA_002305855completencbi1294270
66792Melittangium boletus DSM 147131294270.3completepatric1294270
66792Melittangium boletus DSM 147132767802752draftimg1294270
67770Melittangium boletus DSM 14713 chromosome, complete genomeCP022163ncbi1294270

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes58no
flagellatedno88.375no
gram-positiveno95.734no
anaerobicno98.983no
aerobicyes85.632no
halophileno90.469no
spore-formingno79.103no
glucose-utilyes85.985no
thermophileno98.664yes
motileno54.112no
glucose-fermentno88.274no

External links

@ref: 5498

culture collection no.: DSM 14713, JCM 12633

straininfo link

  • @ref: 73182
  • straininfo: 215421

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24187023Designation of type strains for seven species of the order Myxococcales and proposal for neotype strains of Cystobacter ferrugineus, Cystobacter minus and Polyangium fumosum.Lang E, Reichenbach HInt J Syst Evol Microbiol10.1099/ijs.0.056440-02013Bacterial Typing Techniques, DNA, Bacterial/genetics, Myxococcales/*classification/cytology/genetics, *Phylogeny, Sequence Analysis, DNATranscriptome
Genetics29122879Complete Genome Sequence of the Fruiting Myxobacterium Melittangium boletus DSM 14713.Treuner-Lange A, Bruckskotten M, Rupp O, Goesmann A, Sogaard-Andersen LGenome Announc10.1128/genomeA.01262-172017

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5498Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14713)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14713
18281Reichenbach, H.Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
73182Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID215421.1StrainInfo: A central database for resolving microbial strain identifiers