Strain identifier

BacDive ID: 363

Type strain: Yes

Species: Pusillimonas soli

Strain Designation: MJ07

Strain history: <- MJ Lee, H-Plus Eco, Korea

NCBI tax ID(s): 659016 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17962

BacDive-ID: 363

DSM-Number: 25264

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pusillimonas soli MJ07 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from farm soil.

NCBI tax id

  • NCBI tax id: 659016
  • Matching level: species

strain history

@refhistory
17962<- KCTC <- M. Lee, H-Plus Eco Ltd., KRIBB, Daejeon
67770M. J. Lee MJ07.
67771<- MJ Lee, H-Plus Eco, Korea

doi: 10.13145/bacdive363.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Pusillimonas
  • species: Pusillimonas soli
  • full scientific name: Pusillimonas soli Lee et al. 2010
  • synonyms

    • @ref: 20215
    • synonym: Allopusillimonas soli

@ref: 17962

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Pusillimonas

species: Pusillimonas soli

full scientific name: Pusillimonas soli Lee et al. 2010

strain designation: MJ07

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
23277negative0.7-1.0 µm0.3-0.5 µmrod-shapedyes
67771negative
69480yes94.589
69480negative99.994

multimedia

  • @ref: 17962
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25264.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17962
  • name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/381
  • composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17962positivegrowth28mesophilic
23277positiveoptimum30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
23277positivegrowth5.0-9.0alkaliphile
23277positiveoptimum6.5-7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
23277no
69481no100
69480no99.994

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2327727689decanoate-assimilation
23277168082-dehydro-D-gluconate-builds acid from
23277174265-dehydro-D-gluconate-builds acid from
2327727613amygdalin-builds acid from
2327715963ribitol-builds acid from
2327717108D-arabinose-builds acid from
2327718333D-arabitol-builds acid from
2327717057cellobiose-builds acid from
2327715824D-fructose-builds acid from
2327728847D-fucose-builds acid from
2327712936D-galactose-builds acid from
2327717716lactose-builds acid from
2327762318D-lyxose-builds acid from
2327716899D-mannitol-builds acid from
2327716024D-mannose-builds acid from
232776731melezitose-builds acid from
2327728053melibiose-builds acid from
2327716634raffinose-builds acid from
2327717992sucrose-builds acid from
2327717924D-sorbitol-builds acid from
2327716443D-tagatose-builds acid from
2327732528turanose-builds acid from
2327765327D-xylose-builds acid from
2327716813galactitol-builds acid from
2327717113erythritol-builds acid from
232774853esculin-builds acid from
2327728066gentiobiose-builds acid from
2327728087glycogen-builds acid from
2327717268myo-inositol-builds acid from
2327715443inulin-builds acid from
2327718403L-arabitol-builds acid from
2327718287L-fucose-builds acid from
2327762345L-rhamnose-builds acid from
2327717266L-sorbose-builds acid from
2327765328L-xylose-builds acid from
2327717306maltose-builds acid from
23277320061methyl alpha-D-glucopyranoside-builds acid from
2327743943methyl alpha-D-mannoside-builds acid from
23277506227N-acetylglucosamine-builds acid from
2327717814salicin-builds acid from
2327728017starch-builds acid from
2327727082trehalose-builds acid from
2327717151xylitol-builds acid from
23277168082-dehydro-D-gluconate-growth
23277174265-dehydro-D-gluconate-growth
2327717634D-glucose-growth
2327716899D-mannitol-growth
2327716024D-mannose-growth
2327724265gluconate-growth
2327728087glycogen-growth
2327730849L-arabinose-growth
2327718287L-fucose-growth
2327717306maltose-growth
2327728053melibiose-growth
23277506227N-acetylglucosamine-growth
2327717814salicin-growth
2327717992sucrose-growth
23277casein-hydrolysis
2327717029chitin-hydrolysis
2327716991dna-hydrolysis
2327785249hydroxyethylcellulose-hydrolysis
2327728017starch-hydrolysis
2327737166xylan-hydrolysis
23277161933-hydroxybenzoate+assimilation
2327717128adipate+assimilation
2327716947citrate+assimilation
2327716988D-ribose+assimilation
2327717240itaconate+assimilation
2327716977L-alanine+assimilation
2327715971L-histidine+assimilation
2327717203L-proline+assimilation
2327717115L-serine+assimilation
2327725115malate+assimilation
2327715792malonate+assimilation
2327717268myo-inositol+assimilation
2327718401phenylacetate+assimilation
2327717272propionate+assimilation
232779300suberic acid+assimilation
2327731011valerate+assimilation
2327718305arbutin+builds acid from
2327717634D-glucose+builds acid from
2327716988D-ribose+builds acid from
2327717924D-sorbitol+builds acid from
232778391D-gluconate+builds acid from
2327717754glycerol+builds acid from
2327730849L-arabinose+builds acid from
2327762345L-rhamnose+builds acid from
2327774863methyl beta-D-xylopyranoside+builds acid from
23277370543-hydroxybutyrate+growth
2327730089acetate+growth
2327724996lactate+growth
2327717632nitrate+reduction

enzymes

@refvalueactivityec
23277Acid phosphatase+3.1.3.2
23277Alkaline phosphatase+3.1.3.1
23277alpha-chymotrypsin-3.4.21.1
23277alpha-fucosidase-3.2.1.51
23277alpha-galactosidase-3.2.1.22
23277alpha-glucosidase-3.2.1.20
23277alpha-mannosidase-3.2.1.24
23277beta-galactosidase-3.2.1.23
23277beta-glucosidase-3.2.1.21
23277beta-glucuronidase-3.2.1.31
23277catalase+1.11.1.6
23277cystine arylamidase-3.4.11.3
23277cytochrome oxidase+1.9.3.1
23277esterase (C 4)+
23277esterase lipase (C 8)+
23277leucine arylamidase+3.4.11.1
23277lipase (C 14)-
23277N-acetyl-beta-glucosaminidase-3.2.1.52
23277naphthol-AS-BI-phosphohydrolase+
23277trypsin-3.4.21.4
23277valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17962farm soilnear DaejeonRepublic of KoreaKORAsia
67770Farm soil near DaejeonRepublic of KoreaKORAsia
67771From soilRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Field
#Engineered#Food production#Aquaculture

Safety information

risk assessment

  • @ref: 17962
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17962
  • description: Pusillimonas soli strain MJ07 16S ribosomal RNA gene, partial sequence
  • accession: GQ241322
  • length: 1454
  • database: ena
  • NCBI tax ID: 659016

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Allopusillimonas soli DSM 25264GCA_013416335contigncbi659016
66792Pusillimonas soli strain DSM 25264659016.5wgspatric659016
66792Pusillimonas soli strain KCTC 22455659016.4wgspatric659016
66792Pusillimonas soli KCTC 224552891629496draftimg659016
67770Allopusillimonas soli KCTC 22455GCA_004153445scaffoldncbi659016

GC content

@refGC-contentmethod
1796259.4
2327759.4high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.039yes
anaerobicno99.246yes
halophileno74.962no
spore-formingno94.162yes
glucose-utilno76.983yes
thermophileno96.73yes
flagellatedno73.271no
motileyes86.672yes
aerobicyes90.419no
glucose-fermentno91.875no

External links

@ref: 17962

culture collection no.: DSM 25264, JCM 16386, KCTC 22455

straininfo link

  • @ref: 70043
  • straininfo: 404651

literature

  • topic: Phylogeny
  • Pubmed-ID: 19933592
  • title: Pusillimonas soli sp. nov., isolated from farm soil.
  • authors: Lee M, Woo SG, Chae M, Ten LN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.020404-0
  • year: 2009
  • mesh: Alcaligenaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17962Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25264)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25264
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23277Myungjin Lee, Sung-Geun Woo, Myoungsoo Chae, Leonid N. Ten10.1099/ijs.0.020404-0Pusillimonas soli sp. nov., isolated from farm soilIJSEM 60: 2326-2330 201019933592
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70043Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404651.1StrainInfo: A central database for resolving microbial strain identifiers