Strain identifier
BacDive ID: 346
Type strain:
Species: Castellaniella defragrans
Strain Designation: 54Pin, 54 Pin
Strain history: CIP <- 1998, J. Harder, Max Planck Inst., Bremen, Germany: strain 54 Pin
NCBI tax ID(s): 75697 (species)
General
@ref: 4617
BacDive-ID: 346
DSM-Number: 12141
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile
description: Castellaniella defragrans 54Pin is an aerobe, mesophilic, motile bacterium that was isolated from activated sludge.
NCBI tax id
- NCBI tax id: 75697
- Matching level: species
strain history
@ref | history |
---|---|
4617 | <- J. Harder; 54Pin |
118873 | CIP <- 1998, J. Harder, Max Planck Inst., Bremen, Germany: strain 54 Pin |
doi: 10.13145/bacdive346.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Castellaniella
- species: Castellaniella defragrans
- full scientific name: Castellaniella defragrans (Foss et al. 1998) Kämpfer et al. 2006
synonyms
- @ref: 20215
- synonym: Alcaligenes defragrans
@ref: 4617
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Castellaniella
species: Castellaniella defragrans
full scientific name: Castellaniella defragrans (Foss et al. 1998) Kämpfer et al. 2006
strain designation: 54Pin, 54 Pin
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 92.484 | ||
69480 | 99.999 | negative | ||
118873 | yes | negative | rod-shaped |
colony morphology
- @ref: 118873
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4617 | ANAEROBIC THAUERA MEDIUM (DSMZ Medium 1315) | yes | https://mediadive.dsmz.de/medium/1315 | Name: ANAEROBIC THAUERA MEDIUM (DSMZ Medium 1315) Composition: NaHCO3 2.52 g/l Na2HPO4 x 2 H2O 1.45 g/l K-acetate 0.98 g/l KNO3 0.85 g/l MgSO4 x 7 H2O 0.5 g/l NH4Cl 0.3 g/l KH2PO4 0.25 g/l NaCl 0.05 g/l MnSO4 0.01 g/l CaCl2 0.01 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l NaOH 0.001 g/l alpha-lipoic acid 0.00025 g/l Riboflavin 0.00025 g/l Thiamine-HCl x 2 H2O 0.00025 g/l Vitamin B12 0.00025 g/l Pantothenic acid 0.00025 g/l p-Aminobenzoic acid 0.00025 g/l CoCl2 x 6 H2O 0.00019 g/l Nicotinic acid 0.000125 g/l Nicotine amide 0.000125 g/l Folic acid 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l Biotin 0.0001 g/l ZnCl2 7e-05 g/l Pyridoxamine hydrochloride 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2WO4 x 2 H2O 8e-06 g/l Na2SeO3 x 5 H2O 6e-06 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water |
4617 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | yes | https://mediadive.dsmz.de/medium/1a | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
38568 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
118873 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4617 | positive | growth | 30 | mesophilic |
38568 | positive | growth | 30 | mesophilic |
54933 | positive | growth | 25-42 | |
118873 | positive | growth | 15-41 | |
118873 | no | growth | 5 | psychrophilic |
118873 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
54933 | aerobe |
118873 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
compound production
- @ref: 4617
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
118873 | NaCl | positive | growth | 0-4 % |
118873 | NaCl | no | growth | 6 % |
118873 | NaCl | no | growth | 8 % |
118873 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
118873 | citrate | + | carbon source | 16947 |
118873 | esculin | - | hydrolysis | 4853 |
118873 | hippurate | + | hydrolysis | 606565 |
118873 | nitrate | + | builds gas from | 17632 |
118873 | nitrate | + | reduction | 17632 |
118873 | nitrite | + | builds gas from | 16301 |
118873 | nitrite | + | reduction | 16301 |
118873 | malonate | - | assimilation | 15792 |
118873 | nitrate | + | respiration | 17632 |
antibiotic resistance
- @ref: 118873
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 118873
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
118873 | 15688 | acetoin | - | |
118873 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
118873 | oxidase | + | |
118873 | beta-galactosidase | - | 3.2.1.23 |
118873 | alcohol dehydrogenase | - | 1.1.1.1 |
118873 | gelatinase | + | |
118873 | amylase | - | |
118873 | DNase | - | |
118873 | caseinase | - | 3.4.21.50 |
118873 | catalase | + | 1.11.1.6 |
118873 | tween esterase | - | |
118873 | gamma-glutamyltransferase | + | 2.3.2.2 |
118873 | lecithinase | - | |
118873 | lipase | - | |
118873 | lysine decarboxylase | - | 4.1.1.18 |
118873 | ornithine decarboxylase | - | 4.1.1.17 |
118873 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
118873 | protease | - | |
118873 | tryptophan deaminase | - | |
118873 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118873 | - | - | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118873 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118873 | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | + | + | + | + | - | + | - | + | + | + | + | + | - | + | + | - | - | + | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | geographic location | isolation date |
---|---|---|---|---|---|---|---|
4617 | activated sludge | Germany | DEU | Europe | |||
54933 | Activated sludge | Germany | DEU | Europe | 1995 | ||
118873 | Environment, Activated sludge | Germany | DEU | Europe | Northern | 1995 |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
taxonmaps
- @ref: 69479
- File name: preview.99_1274.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_739;97_862;98_1006;99_1274&stattab=map
- Last taxonomy: Castellaniella defragrans
- 16S sequence: AJ005447
- Sequence Identity:
- Total samples: 4605
- soil counts: 1788
- aquatic counts: 1604
- animal counts: 804
- plant counts: 409
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4617 | 1 | Risk group (German classification) |
118873 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20218
- description: Alcaligenes defragrans 16S rRNA gene, strain 54Pin
- accession: AJ005447
- length: 1484
- database: ena
- NCBI tax ID: 75697
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Castellaniella defragrans DSM 12141 | GCA_014203015 | scaffold | ncbi | 75697 |
66792 | Castellaniella defragrans CCUG 39790 | GCA_008801975 | contig | ncbi | 75697 |
66792 | Castellaniella defragrans strain CCUG 39790 | 75697.10 | wgs | patric | 75697 |
66792 | Castellaniella defragrans strain DSM 12141 | 75697.11 | wgs | patric | 75697 |
66792 | Castellaniella defragrans DSM 12141 | 2861677110 | draft | img | 75697 |
GC content
- @ref: 4617
- GC-content: 66.9±0.3
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 65.279 | no |
gram-positive | no | 97.814 | no |
anaerobic | no | 97.435 | yes |
aerobic | yes | 78.64 | no |
halophile | no | 90.079 | no |
spore-forming | no | 93.912 | no |
glucose-util | no | 66.162 | no |
thermophile | no | 96.186 | yes |
motile | yes | 90.034 | no |
glucose-ferment | no | 89.786 | no |
External links
@ref: 4617
culture collection no.: DSM 12141, CCUG 39790, CIP 105602, LMG 18538
straininfo link
- @ref: 70026
- straininfo: 12163
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9704110 | Alcaligenes defragrans sp. nov., description of four strains isolated on alkenoic monoterpenes ((+)-menthene, alpha-pinene, 2-carene, and alpha-phellandrene) and nitrate. | Foss S, Heyen U, Harder J | Syst Appl Microbiol | 10.1016/s0723-2020(98)80028-3 | 1998 | Alcaligenes/chemistry/growth & development/*isolation & purification, Ammonia/analysis, Base Sequence, Bicyclic Monoterpenes, Chromatography, High Pressure Liquid, Cyclohexane Monoterpenes, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Microscopy, Phase-Contrast, Molecular Sequence Data, *Monoterpenes, Nephelometry and Turbidimetry, Nitrates/analysis/*metabolism, Nitrites/analysis, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA, Terpenes/chemistry/*metabolism | Genetics |
Phylogeny | 16585701 | Castellaniella gen. nov., to accommodate the phylogenetic lineage of Alcaligenes defragrans, and proposal of Castellaniella defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov. | Kampfer P, Denger K, Cook AM, Lee ST, Jackel U, Denner EBM, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63989-0 | 2006 | Alcaligenaceae/*classification/isolation & purification, Alcaligenes/*classification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/analysis/genetics | Genetics |
Phylogeny | 16738107 | Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid. | Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel A | Int J Syst Evol Microbiol | 10.1099/ijs.0.64126-0 | 2006 | Alcaligenaceae/*classification/isolation & purification, Base Composition, Betaproteobacteria/*classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, Disulfides/metabolism, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Enzymology |
Phylogeny | 18768620 | Castellaniella caeni sp. nov., a denitrifying bacterium isolated from sludge of a leachate treatment plant. | Liu QM, Ten LN, Im WT, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.65314-0 | 2008 | Alcaligenaceae/*classification/genetics/*isolation & purification/physiology, Anaerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Industrial Microbiology, Locomotion, Molecular Sequence Data, Nitrogen/metabolism, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sewage/*microbiology, Ubiquinone/analysis | Genetics |
Phylogeny | 19605728 | Castellaniella ginsengisoli sp. nov., a beta-glucosidase-producing bacterium. | Kim MK, Srinivasan S, Kim YJ, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.008300-0 | 2009 | Alcaligenaceae/*classification/enzymology/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Korea, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Panax, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analysis, beta-Glucosidase/*biosynthesis | Enzymology |
Phylogeny | 19819992 | Castellaniella daejeonensis sp. nov., isolated from soil. | Lee M, Jung HM, Woo SG, Yoo SA, Ten LN | Int J Syst Evol Microbiol | 10.1099/ijs.0.018887-0 | 2009 | Alcaligenaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
Phylogeny | 21717340 | Paralcaligenes ureilyticus gen. nov., sp. nov. isolated from soil of a Korean ginseng field. | Kim SJ, Yoo SH, Weon HY, Kim YS, Anandham R, Suh JS, Kwon SW | J Microbiol | 10.1007/s12275-011-0076-7 | 2011 | *Agriculture, Alcaligenaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, Genes, rRNA, Panax/*growth & development, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity | Phenotype |
Phylogeny | 32369004 | Pusillimonas maritima sp. nov., isolated from surface seawater. | Li J, Qi M, Lai Q, Dong C, Liu X, Wang G, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004202 | 2020 | Alcaligenaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*chemistry, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4617 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12141) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12141 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38568 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17639 | ||||
54933 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 39790) | https://www.ccug.se/strain?id=39790 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
70026 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12163.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118873 | Curators of the CIP | Collection of Institut Pasteur (CIP 105602) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105602 |