Strain identifier

BacDive ID: 3391

Type strain: Yes

Species: Archangium violaceum

Strain Designation: Cb vi61

Strain history: CIP <- 2006, DSMZ <- H. Reichenbach, GBF, Braunschweig, Germany: strain Cb vi61

NCBI tax ID(s): 1406225 (strain), 83451 (species)

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General

@ref: 5512

BacDive-ID: 3391

DSM-Number: 14727

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Archangium violaceum Cb vi61 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from soil with decaying plant material.

NCBI tax id

NCBI tax idMatching level
83451species
1406225strain

strain history

@refhistory
5512<- H. Reichenbach; Cb vi61
67770DSM 14727 <-- H. Reichenbach Cb vi61.
123854CIP <- 2006, DSMZ <- H. Reichenbach, GBF, Braunschweig, Germany: strain Cb vi61

doi: 10.13145/bacdive3391.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Archangiaceae
  • genus: Archangium
  • species: Archangium violaceum
  • full scientific name: Archangium violaceum (Reichenbach 2007 ex Kühlwein and Gallwitz 1958) Lang et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Cystobacter violaceus

@ref: 5512

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Archangiaceae

genus: Archangium

species: Archangium violaceum

full scientific name: Archangium violaceum (Reichenbach 2007) Lang et al. 2015

strain designation: Cb vi61

type strain: yes

Morphology

cell morphology

  • @ref: 123854
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

multimedia

  • @ref: 5512
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14727.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5512AGAR WITH E. COLI AS FEED (DSMZ Medium 942)yeshttps://mediadive.dsmz.de/medium/942Name: AGAR WITH E. COLI AS FEED (DSMZ Medium 942) Composition: Agar 15.0 g/l CaCl2 x 2 H2O 1.0 g/l Distilled water
5512VY/2 AGAR (DSMZ Medium 9)yeshttps://mediadive.dsmz.de/medium/9Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
37465MEDIUM 672 -for Cystobacteryes
123854CIP Medium 672yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=672

culture temp

@refgrowthtypetemperaturerange
5512positivegrowth30mesophilic
37465positivegrowth30mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5512soil with decaying plant materialRajasthanIndiaINDAsia
67770Soil with plant residues with faeces of goatIndiaINDAsia
123854Environment, Goat dung, soil with decaying plant materialRajasthanIndiaINDAsia1996

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Decomposing plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_28493.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_958;98_3213;99_28493&stattab=map
  • Last taxonomy: Archangium
  • 16S sequence: DQ768114
  • Sequence Identity:
  • Total samples: 2302
  • soil counts: 1761
  • aquatic counts: 160
  • animal counts: 95
  • plant counts: 286

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
55121Risk group (German classification)
1238541Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5512
  • description: Cystobacter violaceus strain DSM 14727 16S ribosomal RNA gene, partial sequence
  • accession: DQ768114
  • length: 1489
  • database: ena
  • NCBI tax ID: 1406225

External links

@ref: 5512

culture collection no.: DSM 14727, CIP 109131, JCM 12629, Cb vi61

straininfo link

  • @ref: 72904
  • straininfo: 215431

literature

  • topic: Phylogeny
  • Pubmed-ID: 26286530
  • title: Reclassification of Angiococcus disciformis, Cystobacter minus and Cystobacter violaceus as Archangium disciforme comb. nov., Archangium minus comb. nov. and Archangium violaceum comb. nov., unification of the families Archangiaceae and Cystobacteraceae, and emended descriptions of the families Myxococcaceae and Archangiaceae.
  • authors: Lang E, Schumann P, Tindall BJ, Mohr KI, Sproer C
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000533
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Myxococcales/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitle
5512Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14727)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14727
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37465Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6838
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72904Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID215431.1StrainInfo: A central database for resolving microbial strain identifiers
123854Curators of the CIPCollection of Institut Pasteur (CIP 109131)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109131