Strain identifier

BacDive ID: 3226

Type strain: Yes

Species: Corynebacterium resistens

Strain history: Y. Kawamura GTC 2026 <-- Social Insurance Cent. Gen. Hosp., Tokyo, Japan, SICGH 158.

NCBI tax ID(s): 662755 (strain), 258224 (species)

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General

@ref: 12342

BacDive-ID: 3226

DSM-Number: 45100

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Corynebacterium resistens DSM 45100 is a microaerophile, mesophilic bacterium that was isolated from human blood, myelocytic leukemia.

NCBI tax id

NCBI tax idMatching level
258224species
662755strain

strain history

@refhistory
12342<- CCUG <- Y. Kawamura, Gifu University <- GTC 2026 <- SICGH 158
67770Y. Kawamura GTC 2026 <-- Social Insurance Cent. Gen. Hosp., Tokyo, Japan, SICGH 158.

doi: 10.13145/bacdive3226.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium resistens
  • full scientific name: Corynebacterium resistens Otsuka et al. 2005

@ref: 12342

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium resistens

full scientific name: Corynebacterium resistens Otsuka et al. 2005 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.093
69480100positive

multimedia

  • @ref: 12342
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45100.jpg
  • caption: Medium 693 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12342COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
12342TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)yeshttps://mediadive.dsmz.de/medium/535aName: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
12342positivegrowth37mesophilic
58740positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58740
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no99
69480no99.997

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
12342human blood, myelocytic leukemiaJapanJPNAsia
58740Human blood,myelocytic leukemiaJapanJPNAsia
67770Blood culture from a patient with acute myelocytic leukemia

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_3240.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1684;97_2017;98_2481;99_3240&stattab=map
  • Last taxonomy: Corynebacterium resistens
  • 16S sequence: AB128981
  • Sequence Identity:
  • Total samples: 996
  • soil counts: 32
  • aquatic counts: 29
  • animal counts: 935

Safety information

risk assessment

  • @ref: 12342
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 12342
  • description: Corynebacterium resistens gene for 16S rRNA, partial sequence, strain: GTC2026(TYPE STRAIN)
  • accession: AB128981
  • length: 1418
  • database: ena
  • NCBI tax ID: 662755

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium resistens DSM 45100GCA_000177535completencbi662755
66792Corynebacterium resistens DSM 45100662755.7plasmidpatric662755
66792Corynebacterium resistens DSM 45100662755.4wgspatric662755
66792Corynebacterium resistens DSM 45100650716029completeimg662755

GC content

@refGC-contentmethod
1234254.6
6777057.1genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno95.466no
flagellatedno96.82no
gram-positiveyes93.159no
anaerobicno99.254yes
aerobicno73.762yes
halophileyes55.788no
spore-formingno89.875no
thermophileno92.259yes
glucose-utilyes87.303no
glucose-fermentno66.663no

External links

@ref: 12342

culture collection no.: DSM 45100, CCUG 50093, JCM 12819, GTC 2026, SICGH 158

straininfo link

  • @ref: 72740
  • straininfo: 281443

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16081900Corynebacterium resistens sp. nov., a new multidrug-resistant coryneform bacterium isolated from human infections.Otsuka Y, Kawamura Y, Koyama T, Iihara H, Ohkusu K, Ezaki TJ Clin Microbiol10.1128/JCM.43.8.3713-3717.20052005Corynebacterium/*classification/drug effects/metabolism, Corynebacterium Infections/*microbiology, Drug Resistance, Multiple, Bacterial, Humans, Microbial Sensitivity Tests, Phylogeny, RNA, Ribosomal, 16S/geneticsPathogenicity
Metabolism22462578Binding of the IclR-type regulator HutR in the histidine utilization (hut) gene cluster of the human pathogen Corynebacterium resistens DSM 45100.Schroder J, Maus I, Ostermann AL, Kogler AC, Tauch AFEMS Microbiol Lett10.1111/j.1574-6968.2012.02564.x2012Bacterial Proteins/genetics/*metabolism, Base Sequence/genetics, Corynebacterium/genetics/growth & development/*metabolism, DNA, Bacterial/genetics, *Gene Expression Regulation, Bacterial, *Genes, Regulator, Histidine/*metabolism, Humans, Molecular Sequence Data, *Multigene Family, Nucleotide Motifs, Protein Binding, Transcription Initiation Site, Transcription, GeneticPathogenicity
Genetics22524407Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.Schroder J, Maus I, Meyer K, Wordemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch ABMC Genomics10.1186/1471-2164-13-1412012Amino Acids/metabolism, Bacterial Proteins/genetics, Chromosomes, Bacterial, Corynebacterium/*drug effects/*genetics/metabolism, Drug Resistance, Multiple/*genetics, Gene Order, *Genome, Bacterial, Histidine/metabolism, Humans, Leukemia, Myeloid, Acute/microbiology, Metabolic Networks and Pathways, Microbial Sensitivity Tests, Molecular Sequence Annotation, Molecular Sequence Data, Penicillin-Binding Proteins/genetics, Plasmids/genetics, Sequence Analysis, DNA, Virulence Factors/geneticsPathogenicity
Genetics25999560Draft Genome Sequences of Corynebacterium kroppenstedtii CNM633/14 and CNM632/14, Multidrug-Resistant and Antibiotic-Sensitive Isolates from Nodules of Granulomatous Mastitis Patients.Fernandez-Natal MI, Soriano F, Ariza-Miguel J, Marrodan-Ciordia T, Acedo A, Hernandez M, Tauch A, Rodriguez-Lazaro DGenome Announc10.1128/genomeA.00525-152015Pathogenicity
Genetics26294641Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus.Ruckert C, Eimer J, Winkler A, Tauch AGenome Announc10.1128/genomeA.00959-152015Phylogeny
Phylogeny34846289Corynebacterium zhongnanshanii sp. nov. isolated from trachea of Marmota himalayana, Corynebacterium lujinxingii sp. nov. and Corynebacterium wankanglinii sp. nov. from human faeces.Zhang G, Yang J, Lai XH, Jin D, Lu S, Ren Z, Qin T, Pu J, Ge Y, Cheng Y, Yang C, Lv X, Jiao Y, Huang Y, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0050692021Animals, Bacterial Typing Techniques, Base Composition, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Marmota/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Trachea/microbiology, Vitamin K 2/analogs & derivatives/chemistryPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12342Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45100)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45100
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
58740Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50093)https://www.ccug.se/strain?id=50093
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72740Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID281443.1StrainInfo: A central database for resolving microbial strain identifiers