Strain identifier
BacDive ID: 322
Type strain:
Species: Achromobacter insolitus
Strain history: CIP <- 2003, CCUG <- 2002, LMG <- D. Monget, Api, La Balme-les-Grottes, France
NCBI tax ID(s): 217204 (species)
General
@ref: 17377
BacDive-ID: 322
DSM-Number: 23807
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, coccus-shaped, human pathogen
description: Achromobacter insolitus DSM 23807 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human wound, leg.
NCBI tax id
- NCBI tax id: 217204
- Matching level: species
strain history
@ref | history |
---|---|
17377 | <- CCUG |
120136 | CIP <- 2003, CCUG <- 2002, LMG <- D. Monget, Api, La Balme-les-Grottes, France |
doi: 10.13145/bacdive322.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter insolitus
- full scientific name: Achromobacter insolitus Coenye et al. 2003
@ref: 17377
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter insolitus
full scientific name: Achromobacter insolitus Coenye et al. 2003
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell shape | motility |
---|---|---|---|---|
23266 | negative | 1-2 µm | coccus-shaped | |
120136 | negative | rod-shaped | yes |
colony morphology
@ref | type of hemolysis | colony color |
---|---|---|
23266 | gamma | white to light brown |
120136 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
17377 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
36483 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
120136 | CIP Medium 328 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328 | |
120136 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17377 | positive | growth | 28 | mesophilic |
23266 | positive | growth | 28-37 | mesophilic |
36483 | positive | growth | 37 | mesophilic |
57486 | positive | growth | 30-37 | mesophilic |
120136 | positive | growth | 15-37 | |
120136 | no | growth | 5 | psychrophilic |
120136 | no | growth | 41 | thermophilic |
120136 | no | growth | 45 | thermophilic |
Physiology and metabolism
tolerance
- @ref: 23266
- compound: Acetamide
oxygen tolerance
@ref | oxygen tolerance |
---|---|
57486 | aerobe |
120136 | obligate aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
23266 | NaCl | positive | maximum | 4.5 % |
120136 | NaCl | positive | growth | 0-6 % |
120136 | NaCl | no | growth | 8 % |
120136 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23266 | 32382 | (R)-mandelate | - | growth |
23266 | 32800 | (S)-mandelic acid | - | growth |
23266 | 16808 | 2-dehydro-D-gluconate | - | growth |
23266 | 16193 | 3-hydroxybenzoate | - | growth |
23266 | 17879 | 4-hydroxybenzoate | - | growth |
23266 | 39150 | 4-oxopentanoate | - | growth |
23266 | 15887 | 5-aminovaleric acid | - | growth |
23266 | 17426 | 5-dehydro-D-gluconate | - | growth |
23266 | 27856 | acetamide | - | growth |
23266 | 15963 | ribitol | - | growth |
23266 | 27613 | amygdalin | - | growth |
23266 | 18305 | arbutin | - | growth |
23266 | 40538 | benzylamine | - | growth |
23266 | 17750 | betaine | - | growth |
23266 | 43799 | butan-1-amine | - | growth |
23266 | 25646 | octanoate | - | growth |
23266 | 17057 | cellobiose | - | growth |
23266 | 16919 | creatine | - | growth |
23266 | 17108 | D-arabinose | - | growth |
23266 | 18333 | D-arabitol | - | growth |
23266 | 15824 | D-fructose | - | growth |
23266 | 28847 | D-fucose | - | growth |
23266 | 17634 | D-glucose | - | growth |
23266 | 62318 | D-lyxose | - | growth |
23266 | 16024 | D-mannose | - | growth |
23266 | 6731 | melezitose | - | growth |
23266 | 16443 | D-tagatose | - | growth |
23266 | 30927 | D-tartrate | - | growth |
23266 | 32528 | turanose | - | growth |
23266 | 65327 | D-xylose | - | growth |
23266 | 16813 | galactitol | - | growth |
23266 | 17113 | erythritol | - | growth |
23266 | 4853 | esculin | - | growth |
23266 | 16000 | ethanolamine | - | growth |
23266 | 15862 | ethylamine | - | growth |
23266 | 28757 | fructose | - | growth |
23266 | 28260 | galactose | - | growth |
23266 | 28066 | gentiobiose | - | growth |
23266 | 5417 | glucosamine | - | growth |
23266 | 17234 | glucose | - | growth |
23266 | 17754 | glycerol | - | growth |
23266 | 28087 | glycogen | - | growth |
23266 | 29805 | glycolate | - | growth |
23266 | 18295 | histamine | - | growth |
23266 | 17268 | myo-inositol | - | growth |
23266 | 15443 | inulin | - | growth |
23266 | 30803 | isophthalate | - | growth |
23266 | 30849 | L-arabinose | - | growth |
23266 | 18403 | L-arabitol | - | growth |
23266 | 16467 | L-arginine | - | growth |
23266 | 18287 | L-fucose | - | growth |
23266 | 62345 | L-rhamnose | - | growth |
23266 | 17266 | L-sorbose | - | growth |
23266 | 65328 | L-xylose | - | growth |
23266 | 17716 | lactose | - | growth |
23266 | 15792 | malonate | - | growth |
23266 | 17306 | maltose | - | growth |
23266 | 29864 | mannitol | - | growth |
23266 | 28053 | melibiose | - | growth |
23266 | 320061 | methyl alpha-D-glucopyranoside | - | growth |
23266 | 43943 | methyl alpha-D-mannoside | - | growth |
23266 | 74863 | methyl beta-D-xylopyranoside | - | growth |
23266 | 506227 | N-acetylglucosamine | - | growth |
23266 | 30623 | oxalate | - | growth |
23266 | 74848 | pentan-1-amine | - | growth |
23266 | 17563 | phthalate | - | growth |
23266 | 16634 | raffinose | - | growth |
23266 | 33942 | ribose | - | growth |
23266 | 17814 | salicin | - | growth |
23266 | 15611 | sarcosine | - | growth |
23266 | 30911 | sorbitol | - | growth |
23266 | 15746 | spermine | - | growth |
23266 | 28017 | starch | - | growth |
23266 | 17992 | sucrose | - | growth |
23266 | 30043 | terephthalate | - | growth |
23266 | 27082 | trehalose | - | growth |
23266 | 18123 | trigonelline | - | growth |
23266 | 53426 | tween 80 | - | growth |
23266 | 16199 | urea | - | growth |
23266 | 17151 | xylitol | - | growth |
23266 | 18222 | xylose | - | growth |
23266 | 4853 | esculin | - | hydrolysis |
23266 | 16301 | nitrite | - | reduction |
23266 | 29991 | L-aspartate | + | growth |
23266 | 28340 | 2-aminobutyrate | + | growth |
23266 | 19475 | 2-aminopentanoic acid | + | growth |
23266 | 16808 | 2-dehydro-D-gluconate | + | growth |
23266 | 87997 | 3-aminobutyrate | + | growth |
23266 | 16193 | 3-hydroxybenzoate | + | growth |
23266 | 16865 | gamma-aminobutyric acid | + | growth |
23266 | 30089 | acetate | + | growth |
23266 | 22210 | aconitate | + | growth |
23266 | 17128 | adipate | + | growth |
23266 | 78208 | azelaate | + | growth |
23266 | 16958 | beta-alanine | + | growth |
23266 | 17968 | butyrate | + | growth |
23266 | 27689 | decanoate | + | growth |
23266 | 16947 | citrate | + | growth |
23266 | 15570 | D-alanine | + | growth |
23266 | 37054 | 3-hydroxybutyrate | + | growth |
23266 | 33871 | glycerate | + | growth |
23266 | 29806 | fumarate | + | growth |
23266 | 24265 | gluconate | + | growth |
23266 | 17859 | glutaric acid | + | growth |
23266 | 48944 | isobutyrate | + | growth |
23266 | 48942 | isovalerate | + | growth |
23266 | 17240 | itaconate | + | growth |
23266 | 16977 | L-alanine | + | growth |
23266 | 17561 | L-cysteine | + | growth |
23266 | 29985 | L-glutamate | + | growth |
23266 | 15971 | L-histidine | + | growth |
23266 | 17191 | L-isoleucine | + | growth |
23266 | 15603 | L-leucine | + | growth |
23266 | 18019 | L-lysine | + | growth |
23266 | 18347 | L-norleucine | + | growth |
23266 | 17295 | L-phenylalanine | + | growth |
23266 | 17203 | L-proline | + | growth |
23266 | 17115 | L-serine | + | growth |
23266 | 30924 | L-tartrate | + | growth |
23266 | 16857 | L-threonine | + | growth |
23266 | 16828 | L-tryptophan | + | growth |
23266 | 17895 | L-tyrosine | + | growth |
23266 | 16414 | L-valine | + | growth |
23266 | 24996 | lactate | + | growth |
23266 | 25115 | malate | + | growth |
23266 | 36986 | mesaconate | + | growth |
23266 | 30928 | meso-tartrate | + | growth |
23266 | 30860 | methylmalonic acid | + | growth |
23266 | 32361 | nonanoate | + | growth |
23266 | 18401 | phenylacetate | + | growth |
23266 | 17774 | pimelate | + | growth |
23266 | 17272 | propionate | + | growth |
23266 | 17148 | putrescine | + | growth |
23266 | 15361 | pyruvate | + | growth |
23266 | 41865 | sebacic acid | + | growth |
23266 | 9300 | suberic acid | + | growth |
23266 | 30031 | succinate | + | growth |
23266 | trimethoxybenzoate | + | growth | |
23266 | 16765 | tryptamine | + | growth |
23266 | 31011 | valerate | + | growth |
23266 | 17632 | nitrate | + | reduction |
120136 | 16947 | citrate | + | carbon source |
120136 | 4853 | esculin | - | hydrolysis |
120136 | 606565 | hippurate | + | hydrolysis |
120136 | 17632 | nitrate | - | builds gas from |
120136 | 17632 | nitrate | + | reduction |
120136 | 16301 | nitrite | - | builds gas from |
120136 | 16301 | nitrite | - | reduction |
120136 | 15792 | malonate | + | assimilation |
120136 | 17632 | nitrate | + | respiration |
antibiotic resistance
- @ref: 120136
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23266 | 35581 | indole | no |
23266 | 16136 | hydrogen sulfide | no |
120136 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
120136 | 15688 | acetoin | - | |
120136 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23266 | alpha-chymotrypsin | - | 3.4.21.1 |
23266 | alpha-fucosidase | - | 3.2.1.51 |
23266 | alpha-galactosidase | - | 3.2.1.22 |
23266 | alpha-glucosidase | - | 3.2.1.20 |
23266 | alpha-mannosidase | - | 3.2.1.24 |
23266 | amylase | - | |
23266 | arginine dihydrolase | - | 3.5.3.6 |
23266 | beta-galactosidase | - | 3.2.1.23 |
23266 | beta-glucoronidase | - | 3.2.1.31 |
23266 | beta-glucosidase | - | 3.2.1.21 |
23266 | catalase | + | 1.11.1.6 |
23266 | cystine arylamidase | - | 3.4.11.3 |
23266 | cytochrome oxidase | + | 1.9.3.1 |
23266 | DNase | - | |
23266 | esterase lipase (C 8) | - | |
23266 | gelatinase | - | |
23266 | leucine arylamidase | + | 3.4.11.1 |
23266 | lipase (C 14) | - | |
23266 | lysine decarboxylase | - | 4.1.1.18 |
23266 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
23266 | ornithine decarboxylase | - | 4.1.1.17 |
23266 | trypsin | - | 3.4.21.4 |
23266 | urease | - | 3.5.1.5 |
23266 | valine arylamidase | - | |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
120136 | oxidase | + | |
120136 | beta-galactosidase | - | 3.2.1.23 |
120136 | alcohol dehydrogenase | - | 1.1.1.1 |
120136 | gelatinase | - | |
120136 | amylase | - | |
120136 | DNase | - | |
120136 | caseinase | - | 3.4.21.50 |
120136 | catalase | + | 1.11.1.6 |
120136 | tween esterase | - | |
120136 | gamma-glutamyltransferase | + | 2.3.2.2 |
120136 | lecithinase | - | |
120136 | lipase | - | |
120136 | lysine decarboxylase | + | 4.1.1.18 |
120136 | ornithine decarboxylase | - | 4.1.1.17 |
120136 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120136 | tryptophan deaminase | - | |
120136 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120136 | - | - | + | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120136 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | + | + | + | + | + | + | + | - | - | - | - | - | - | + | + | - | - | - | + | + | - | - | - | - | - | - | + | - | + | + | + | - | + | + | + | + | - | - | + | - | + | + | + | + | + | + | + | - | - | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | isolation date |
---|---|---|---|
17377 | human wound, leg | ||
57486 | Human wound,leg | 1984 | |
120136 | Human, Wound | 1984 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Other | #Wound |
#Host Body-Site | #Limb | #Leg |
taxonmaps
- @ref: 69479
- File name: preview.99_954.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_954&stattab=map
- Last taxonomy: Achromobacter
- 16S sequence: JQ746423
- Sequence Identity:
- Total samples: 7288
- soil counts: 1429
- aquatic counts: 1212
- animal counts: 2896
- plant counts: 1751
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
17377 | yes, in single cases | 1 | Risk group (German classification) |
120136 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Achromobacter insolitus strain CCUG 47057 16S ribosomal RNA gene, partial sequence | JQ746423 | 1309 | ena | 217204 |
17377 | Achromobacter sp. LMG 6003 16S ribosomal RNA gene, partial sequence | AY170847 | 1473 | ena | 217204 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Achromobacter insolitus DSM 23807 | GCA_001971645 | complete | ncbi | 217204 |
66792 | Achromobacter insolitus LMG 6003 | GCA_002209555 | contig | ncbi | 217204 |
66792 | Achromobacter insolitus LMG 6003 | GCA_902859615 | contig | ncbi | 217204 |
66792 | Achromobacter insolitus strain DSM 23807 | 217204.3 | complete | patric | 217204 |
66792 | Achromobacter insolitus strain LMG 6003 | 217204.5 | wgs | patric | 217204 |
66792 | Achromobacter insolitus strain LMG 6003 | 217204.13 | wgs | patric | 217204 |
66792 | Achromobacter insolitus DSM 23807 | 2751185845 | complete | img | 217204 |
66792 | Achromobacter insolitus LMG 6003 | 2855745187 | draft | img | 217204 |
GC content
@ref | GC-content | method |
---|---|---|
17377 | 64.9 | |
23266 | 64.9 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 55.867 | no |
gram-positive | no | 98.316 | yes |
anaerobic | no | 98.417 | no |
aerobic | yes | 88.582 | no |
halophile | no | 89.062 | no |
spore-forming | no | 94.215 | no |
glucose-util | no | 59.621 | no |
thermophile | no | 99.533 | no |
motile | yes | 87.376 | no |
glucose-ferment | no | 90.871 | no |
External links
@ref: 17377
culture collection no.: DSM 23807, CCUG 47057, LMG 6003, CIP 108202, API 201-3-84, Gilardi 3038
straininfo link
- @ref: 70003
- straininfo: 793
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 14657110 | Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples. | Coenye T, Vancanneyt M, Falsen E, Swings J, Vandamme P | Int J Syst Evol Microbiol | 10.1099/ijs.0.02698-0 | 2003 | Achromobacter/*classification/genetics/isolation & purification, DNA, Ribosomal/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics | Pathogenicity |
Phylogeny | 19749028 | Pusillimonas ginsengisoli sp. nov., isolated from soil of a ginseng field. | Srinivasan S, Kim MK, Sathiyaraj G, Kim YJ, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.018358-0 | 2009 | Alcaligenaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Panax/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
Phylogeny | 27902206 | Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f. | Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001566 | 2017 | Achromobacter/*classification/genetics/isolation & purification, Aloe/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Ubiquinone/chemistry | Transcriptome |
Metabolism | 28369432 | Complete genome sequence of Achromobacter insolitus type strain LMG 6003T, a pathogen isolated from leg wound. | Li G, Zhang T, Yang L, Cao Y, Guo X, Qin J, Yang Q, You S, Yuan G, Jiang K, Luo J, Li Z, Gao L, Jiang K, Wu L, Zheng J | Pathog Dis | 10.1093/femspd/ftx037 | 2017 | Achromobacter/classification/*genetics/isolation & purification, Base Composition, *Chromosome Mapping, DNA, Bacterial/*genetics/metabolism, DNA, Circular/genetics/metabolism, Endopeptidases/genetics/metabolism, Fimbriae Proteins/genetics/metabolism, *Gene Expression Regulation, Bacterial, Gene Ontology, *Genome, Bacterial, Genomic Islands, Humans, Leg/microbiology, Molecular Sequence Annotation, RNA, Ribosomal, 16S/genetics/metabolism, RNA, Transfer/genetics/metabolism, Type VI Secretion Systems/genetics/metabolism, Whole Genome Sequencing | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
17377 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23807) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23807 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23266 | Tom Coenye, Marc Vancanneyt, Enevold Falsen, Jean Swings, Peter Vandamme | 10.1099/ijs.0.02698-0 | Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples | IJSEM 53: 1819-1824 2003 | 14657110 | |
36483 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5799 | ||||
57486 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 47057) | https://www.ccug.se/strain?id=47057 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
70003 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID793.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120136 | Curators of the CIP | Collection of Institut Pasteur (CIP 108202) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108202 |