Strain identifier

BacDive ID: 3215

Type strain: Yes

Species: Corynebacterium suicordis

Strain Designation: P81/02

Strain history: CIP <- 2003, CCUG <- 2002, CECT <- Fdez-Garayzabal, Madrid, Spain

NCBI tax ID(s): 1121369 (strain), 203264 (species)

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General

@ref: 12352

BacDive-ID: 3215

DSM-Number: 45110

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, colony-forming, animal pathogen

description: Corynebacterium suicordis P81/02 is a facultative anaerobe, mesophilic, Gram-positive animal pathogen that forms circular colonies and was isolated from pig heart.

NCBI tax id

NCBI tax idMatching level
1121369strain
203264species

strain history

@refhistory
12352<- CCUG <- CECT <- J. F. Fernández-Garayzábal, Madrid, Spain
67770CCUG 46963 <-- CECT 5724 <-- J. F. Fernández-Garayzábal P81/02.
123373CIP <- 2003, CCUG <- 2002, CECT <- Fdez-Garayzabal, Madrid, Spain

doi: 10.13145/bacdive3215.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium suicordis
  • full scientific name: Corynebacterium suicordis Vela et al. 2003

@ref: 12352

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium suicordis

full scientific name: Corynebacterium suicordis Vela et al. 2003

strain designation: P81/02

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
23200positiverod-shapedno
123373positiverod-shapedno

colony morphology

@reftype of hemolysiscolony sizecolony colorcolony shapeincubation periodmedium used
23200gamma1-2 mmwhitishcircular2 dayssheep blood agar
123373

multimedia

  • @ref: 12352
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45110.jpg
  • caption: Medium 535a 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12352COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
12352TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)yeshttps://mediadive.dsmz.de/medium/535aName: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
23200sheep blood agaryes
32902MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123373CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
12352positivegrowth37mesophilic
23200positivegrowth37mesophilic
32902positivegrowth37mesophilic
57425positivegrowth37mesophilic
67770positivegrowth37mesophilic
123373positivegrowth10-37
123373nogrowth41thermophilic
123373nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23200facultative anaerobe
57425microaerophile
123373microaerophile

spore formation

  • @ref: 23200
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
123373NaClpositivegrowth0-2 %
123373NaClnogrowth4 %
123373NaClnogrowth6 %
123373NaClnogrowth8 %
123373NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23200168082-dehydro-D-gluconate-builds acid from
23200174265-dehydro-D-gluconate-builds acid from
2320015963ribitol-builds acid from
2320027613amygdalin-builds acid from
2320018305arbutin-builds acid from
2320017057cellobiose-builds acid from
2320017108D-arabinose-builds acid from
2320018333D-arabitol-builds acid from
2320015824D-fructose-builds acid from
2320028847D-fucose-builds acid from
2320017634D-glucose-builds acid from
2320062318D-lyxose-builds acid from
2320016024D-mannose-builds acid from
2320016634raffinose-builds acid from
2320016443D-tagatose-builds acid from
2320032528turanose-builds acid from
2320065327D-xylose-builds acid from
2320017113erythritol-builds acid from
2320028260galactose-builds acid from
2320028066gentiobiose-builds acid from
2320017754glycerol-builds acid from
2320028087glycogen-builds acid from
2320017268myo-inositol-builds acid from
2320015443inulin-builds acid from
2320030849L-arabinose-builds acid from
2320018403L-arabitol-builds acid from
2320018287L-fucose-builds acid from
2320017266L-sorbose-builds acid from
2320065328L-xylose-builds acid from
2320017716lactose-builds acid from
2320017306maltose-builds acid from
2320029864mannitol-builds acid from
232006731melezitose-builds acid from
2320028053melibiose-builds acid from
23200320061methyl alpha-D-glucopyranoside-builds acid from
2320043943methyl alpha-D-mannoside-builds acid from
2320074863methyl beta-D-xylopyranoside-builds acid from
23200506227N-acetylglucosamine-builds acid from
2320026546rhamnose-builds acid from
2320033942ribose-builds acid from
2320017814salicin-builds acid from
2320030911sorbitol-builds acid from
2320017992sucrose-builds acid from
2320027082trehalose-builds acid from
2320017151xylitol-builds acid from
232004853esculin-hydrolysis
232005291gelatin-hydrolysis
2320017632nitrate-reduction
2320016199urea+hydrolysis
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
12337316947citrate-carbon source
1233734853esculin-hydrolysis
123373606565hippurate+hydrolysis
12337317632nitrate-reduction
12337316301nitrite-reduction
12337345285pyrazinamide+hydrolysis

antibiotic resistance

  • @ref: 123373
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 123373
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12337315688acetoin-
12337317234glucose-

enzymes

@refvalueactivityec
23200acid phosphatase+3.1.3.2
23200alkaline phosphatase+3.1.3.1
23200alpha-fucosidase-3.2.1.51
23200alpha-galactosidase-3.2.1.22
23200alpha-glucosidase-3.2.1.20
23200alpha-mannosidase-3.2.1.24
23200beta-galactosidase-3.2.1.23
23200beta-glucosidase-3.2.1.21
23200beta-glucuronidase-3.2.1.31
23200catalase+1.11.1.6
23200chymotrypsin-3.4.4.5
23200cystine arylamidase-3.4.11.3
23200cytochrome oxidase-1.9.3.1
23200esterase (C 4)+
23200esterase lipase (C 8)+
23200leucine arylamidase-3.4.11.1
23200lipase (C 14)-
23200naphthol-AS-BI-phosphohydrolase+
23200pyrazinamidase+3.5.1.B15
23200pyrrolidonyl arylamidase-3.4.19.3
23200trypsin-3.4.21.4
23200valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
123373oxidase-
123373beta-galactosidase-3.2.1.23
123373alcohol dehydrogenase-1.1.1.1
123373gelatinase-
123373amylase-
123373DNase-
123373caseinase-3.4.21.50
123373catalase+1.11.1.6
123373tween esterase+
123373gamma-glutamyltransferase+2.3.2.2
123373lecithinase-
123373lipase-
123373lysine decarboxylase-4.1.1.18
123373ornithine decarboxylase-4.1.1.17
123373phenylalanine ammonia-lyase-4.3.1.24
123373tryptophan deaminase-
123373urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123373-+++-------+---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123373----+/-------------------------------------+/-------+/-

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentisolation date
12352pig heart
57425Pig heart2002-03-01SpainESPEurope
67770Heart of a pig with pericarditis
123373Animal, Pig heartSpainESPEurope2002

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Organ#Heart

taxonmaps

  • @ref: 69479
  • File name: preview.99_12198.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_5221;97_6304;98_9169;99_12198&stattab=map
  • Last taxonomy: Corynebacterium sp.
  • 16S sequence: AJ504424
  • Sequence Identity:
  • Total samples: 25118
  • soil counts: 2276
  • aquatic counts: 2441
  • animal counts: 19876
  • plant counts: 525

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
12352yes2Risk group (German classification)
1233732Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Corynebacterium suicordis strain CIP 108201 16S ribosomal RNA gene, partial sequenceAY772710418ena203264
12352Corynebacterium sp. S-81/02 16S rRNA gene, strain S-81/02AJ5044241380ena203264

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium sp. DSM 451102783663.3wgspatric2783663
66792Corynebacterium suicordis DSM 451102918422303draftimg1121369
66792Corynebacterium suicordis DSM 45110GCA_015351405contigncbi1121369

External links

@ref: 12352

culture collection no.: DSM 44851, DSM 45110, CCUG 46963, CECT 5724, CIP 108201, JCM 12370

straininfo link

  • @ref: 72730
  • straininfo: 127986

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny14657140Corynebacterium suicordis sp. nov., from pigs.Vela AI, Mateos A, Collins MD, Briones V, Hutson RA, Dominguez L, Fernandez-Garayzabal JFInt J Syst Evol Microbiol10.1099/ijs.0.02645-02003Anaerobiosis, Animals, Corynebacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, *Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Swine/*microbiologyGenetics
Phylogeny31908782Corynebacterium dentalis sp. nov., a new bacterium isolated from dental plaque of a woman with periodontitis.Benabdelkader S, Boxberger M, Lo CI, Aboudharam G, La Scola B, Fenollar FNew Microbes New Infect10.1016/j.nmni.2019.1006252019
Phylogeny34846289Corynebacterium zhongnanshanii sp. nov. isolated from trachea of Marmota himalayana, Corynebacterium lujinxingii sp. nov. and Corynebacterium wankanglinii sp. nov. from human faeces.Zhang G, Yang J, Lai XH, Jin D, Lu S, Ren Z, Qin T, Pu J, Ge Y, Cheng Y, Yang C, Lv X, Jiao Y, Huang Y, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0050692021Animals, Bacterial Typing Techniques, Base Composition, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Marmota/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Trachea/microbiology, Vitamin K 2/analogs & derivatives/chemistryPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12352Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45110)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45110
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23200A. I. Vela, A. Mateos, M. D. Collins, V. Briones, R. A. Hutson, L. Domínguez, J. F. Fernández-Garayzábal10.1099/ijs.0.02645-0Corynebacterium suicordis sp. nov., from pigsIJSEM 53: 2027-2031 200314657140
32902Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5798
57425Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46963)https://www.ccug.se/strain?id=46963
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72730Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127986.1StrainInfo: A central database for resolving microbial strain identifiers
123373Curators of the CIPCollection of Institut Pasteur (CIP 108201)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108201