Strain identifier

BacDive ID: 3201

Type strain: Yes

Species: Corynebacterium auriscanis

Strain Designation: M598/96/3

Strain history: CIP <- 2000, CCUG <- 1998, M. D. Collins, IFR, Reading, UK <- L. Hoyles, Reading, UK <- G. Foster, Inverness, UK

NCBI tax ID(s): 99807 (species)

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General

@ref: 11922

BacDive-ID: 3201

DSM-Number: 44609

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive

description: Corynebacterium auriscanis M598/96/3 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from dog ear infection, bilateral otitis.

NCBI tax id

  • NCBI tax id: 99807
  • Matching level: species

strain history

@refhistory
11922<- CCUG <- M. D. Collins, IFR Reading <- L. Hoyles <- G. Foster, Inverness, UK
67770CCUG 39938 <-- M. D. Collins M598/96/1 <-- L. Hoyles <-- G. Foster.
116639CIP <- 2000, CCUG <- 1998, M. D. Collins, IFR, Reading, UK <- L. Hoyles, Reading, UK <- G. Foster, Inverness, UK

doi: 10.13145/bacdive3201.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium auriscanis
  • full scientific name: Corynebacterium auriscanis Collins et al. 2000

@ref: 11922

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium auriscanis

full scientific name: Corynebacterium auriscanis Collins et al. 2000 emend. Nouioui et al. 2018

strain designation: M598/96/3

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
116639positiveno
125438no93
125438positive92.043
125439positive98.1
125439no95

colony morphology

  • @ref: 116639

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39550MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116639CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
39550positivegrowth37
67770positivegrowth37
116639positivegrowth15-41
116639nogrowth10
116639nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
116639obligate aerobe
125439obligate aerobe92.4

halophily

  • @ref: 116639
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11663916947citrate-carbon source
1166394853esculin-hydrolysis
116639606565hippurate+hydrolysis
11663917632nitrate-reduction
11663916301nitrite-reduction
11663917632nitrate-respiration
68371Potassium 5-ketogluconate-builds acid from
6837127613amygdalin-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

antibiotic resistance

  • @ref: 116639
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 116639
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11663915688acetoin-
11663917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116639oxidase-
116639beta-galactosidase-3.2.1.23
116639alcohol dehydrogenase-1.1.1.1
116639gelatinase-
116639amylase-
116639DNase+
116639caseinase-3.4.21.50
116639catalase+1.11.1.6
116639tween esterase+
116639gamma-glutamyltransferase-2.3.2.2
116639lecithinase-
116639lipase-
116639lysine decarboxylase-4.1.1.18
116639ornithine decarboxylase-4.1.1.17
116639phenylalanine ammonia-lyase-4.3.1.24
116639protease-
116639tryptophan deaminase-
116639urease-3.5.1.5
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22

fatty acid profile

  • @reffatty acidpercentageECL
    54999C14:03.814
    54999C16:037.716
    54999C16:1 ω11c415.757
    54999C18:1 ω9c49.917.769
    54999C18:2 ω6,9c/C18:0 ANTE4.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    54999C14:02.714
    54999C15:04.515
    54999C16:037.216
    54999C17:02.117
    54999C18:0418
    54999C16:1 ω7c1.115.819
    54999C16:1 ω9c0.615.774
    54999C17:0 anteiso5.116.722
    54999C17:1 ω9c2.516.773
    54999C18:1 ω9c24.717.769
    54999C18:2 ω6,9c/C18:0 ANTE15.517.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116639-+++++--------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116639----+/-----+/-+/---------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116639+-+----------------+-----------------------------+---------------------------+-++-------++++--+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
11922dog ear infection, bilateral otitisUnited KingdomGBREurope
54999Dog ear infection,bilateral otitisUnited KingdomGBREurope1996
67770Ear of a dog suffering from bilateral otitis
116639Animal, Dog, otitisUnited KingdomGBREurope1996

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Organ#Ear

taxonmaps

  • @ref: 69479
  • File name: preview.99_6953.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1684;97_2017;98_2481;99_6953&stattab=map
  • Last taxonomy: Corynebacterium auriscanis
  • 16S sequence: AB595944
  • Sequence Identity:
  • Total samples: 845
  • soil counts: 6
  • aquatic counts: 20
  • animal counts: 819

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
119222Risk group (German classification)
1166392Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Corynebacterium auriscanis 16S ribosomal RNA gene, partial sequenceAY438049418nuccore99807
67770Corynebacterium auriscanis gene for 16S rRNA, partial sequence, strain: JCM 12369AB5959441460nuccore99807
124043Corynebacterium auriscanis gene for 16S rRNA, partial sequence.AB470623543nuccore99807

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium auriscanis CIP 10662999807.3wgspatric99807
66792Corynebacterium auriscanis CIP 1066292627854278draftimg99807
67770Corynebacterium auriscanis CIP 106629GCA_000767255contigncbi99807

GC content

@refGC-contentmethod
1192261
6777058.5genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes92.043no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.722no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes69.812yes
125438spore-formingspore-formingAbility to form endo- or exosporesno79.499no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96no
125438motile2+flagellatedAbility to perform flagellated movementno93no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno78.6
125439BacteriaNetmotilityAbility to perform movementno95
125439BacteriaNetgram_stainReaction to gram-stainingpositive98.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe92.4

External links

@ref: 11922

culture collection no.: JCM 12369, DSM 44609, CCUG 39938, CIP 106629, LMG 19530

straininfo link

  • @ref: 72717
  • straininfo: 265695

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10523531Phenotypic and phylogenetic characterization of a new Corynebacterium species from dogs: description of Corynebacterium auriscanis sp. nov.Collins MD, Hoyles L, Lawson PA, Falsen E, Robson RL, Foster GJ Clin Microbiol10.1128/JCM.37.11.3443-3447.19991999Animals, Corynebacterium/*classification/*genetics/isolation & purification, Dog Diseases/microbiology, Dogs/*microbiology, Molecular Sequence Data, Otitis/microbiology/veterinary, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Genetics27516502Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimaraes LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva AGenome Announc10.1128/genomeA.00683-162016Phylogeny
Phylogeny34846289Corynebacterium zhongnanshanii sp. nov. isolated from trachea of Marmota himalayana, Corynebacterium lujinxingii sp. nov. and Corynebacterium wankanglinii sp. nov. from human faeces.Zhang G, Yang J, Lai XH, Jin D, Lu S, Ren Z, Qin T, Pu J, Ge Y, Cheng Y, Yang C, Lv X, Jiao Y, Huang Y, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0050692021Animals, Bacterial Typing Techniques, Base Composition, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Marmota/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Trachea/microbiology, Vitamin K 2/analogs & derivatives/chemistryPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11922Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44609)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44609
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39550Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18781
54999Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 39938)https://www.ccug.se/strain?id=39938
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72717Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265695.1StrainInfo: A central database for resolving microbial strain identifiers
116639Curators of the CIPCollection of Institut Pasteur (CIP 106629)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106629
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1