Strain identifier
BacDive ID: 3197
Type strain: 
Species: Corynebacterium glaucum
Strain Designation: KO_98
Strain history: <- European Space Agency, Noordwijk, Netherlands; KO_98 <- C. Moissl-Eichinger, Univ. Regensburg, Germany
NCBI tax ID(s): 187491 (species)
version 8.1 (current version)
General
@ref: 16879
BacDive-ID: 3197
DSM-Number: 30827
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Corynebacterium glaucum KO_98 is a mesophilic bacterium that was isolated from spacecraft-associated clean room class ISO 8, Herschel Space Observatory.
NCBI tax id
- NCBI tax id: 187491
- Matching level: species
strain history
- @ref: 16879
- history: <- European Space Agency, Noordwijk, Netherlands; KO_98 <- C. Moissl-Eichinger, Univ. Regensburg, Germany
doi: 10.13145/bacdive3197.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium glaucum
- full scientific name: Corynebacterium glaucum Yassin et al. 2003
@ref: 16879
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium glaucum
full scientific name: Corynebacterium glaucum Yassin et al. 2003
strain designation: KO_98
type strain: no
Morphology
multimedia
- @ref: 16879
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_30827.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 16879
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 16879
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16879
- sample type: spacecraft-associated clean room class ISO 8, Herschel Space Observatory
- geographic location: Kourou, Centre Spatial Guyanais
- country: French Guiana
- origin.country: FRA
- continent: Middle and South America
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 16879
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16879
- description: Corynebacterium glaucum strain KO_CM98 16S ribosomal RNA gene, partial sequence
- accession: GQ497936
- length: 887
- database: ena
- NCBI tax ID: 187491
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium glaucum DSM 30827 | GCA_002287505 | complete | ncbi | 187491 |
| 66792 | Corynebacterium glaucum strain DSM 30827 | 187491.3 | complete | patric | 187491 |
| 66792 | Corynebacterium glaucum DSM 30827 Genome sequencing | 2775507269 | complete | img | 187491 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.589 | no |
| gram-positive | yes | 92.485 | no |
| anaerobic | no | 99.146 | no |
| aerobic | no | 57.442 | no |
| halophile | yes | 71.73 | no |
| spore-forming | no | 93.711 | no |
| glucose-util | yes | 79.747 | no |
| thermophile | no | 96.338 | yes |
| motile | no | 93.077 | no |
| glucose-ferment | no | 67.202 | no |
External links
@ref: 16879
culture collection no.: DSM 30827
straininfo link
- @ref: 72713
- straininfo: 401989
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16879 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30827) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30827 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 72713 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401989.1 | StrainInfo: A central database for resolving microbial strain identifiers |