Strain identifier

BacDive ID: 317

Type strain: No

Species: Achromobacter denitrificans

Strain Designation: CMA1

Strain history: <- F. Streichsbier (Pseudomonas cepacia, CMA1)

NCBI tax ID(s): 32002 (species)

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General

@ref: 4510

BacDive-ID: 317

DSM-Number: 11850

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Achromobacter denitrificans CMA1 is a mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 32002
  • Matching level: species

strain history

  • @ref: 4510
  • history: <- F. Streichsbier (Pseudomonas cepacia, CMA1)

doi: 10.13145/bacdive317.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter denitrificans
  • full scientific name: Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

  • synonyms

    @refsynonym
    20215Alcaligenes denitrificans
    20215Achromobacter xylosoxidans subsp. denitrificans
    20215Alcaligenes xylosoxidans subsp. denitrificans

@ref: 4510

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter denitrificans

full scientific name: Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003

strain designation: CMA1

type strain: no

Morphology

cell morphology

  • @ref: 125438
  • gram stain: negative
  • confidence: 97.182

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4510NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
4510MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)yeshttps://mediadive.dsmz.de/medium/457Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

  • @ref: 4510
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369urease-3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4510+--------------++++++

Isolation, sampling and environmental information

isolation

  • @ref: 4510
  • sample type: soil
  • country: Austria
  • origin.country: AUT
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 4510
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Achromobacter denitrificans strain FDAARGOS_787
  • accession: 32002.40
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 32002

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.182no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.341no
125438spore-formingspore-formingAbility to form endo- or exosporesno86.889no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.211no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.485no
125438motile2+flagellatedAbility to perform flagellated movementyes84.821no

External links

@ref: 4510

culture collection no.: DSM 11850

straininfo link

  • @ref: 69998
  • straininfo: 49189

Reference

@idauthorscataloguedoi/urltitle
4510Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11850)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11850
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69998Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49189.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets