Strain identifier

BacDive ID: 3166

Type strain: Yes

Species: Corynebacterium accolens

Strain history: CIP <- 1996, P. Riegel, Louis Pasteur Univ., Strasbourg, France <- CCUG <- CNCTC <- Neubauer

NCBI tax ID(s): 525260 (strain), 38284 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11644

BacDive-ID: 3166

DSM-Number: 44278

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Corynebacterium accolens DSM 44278 is a microaerophile, mesophilic bacterium that was isolated from human cervix.

NCBI tax id

NCBI tax idMatching level
38284species
525260strain

strain history

@refhistory
11644<- CCUG <- J. Sourek, CNCTC
67770CNCTC Th 1/57.
115988CIP <- 1996, P. Riegel, Louis Pasteur Univ., Strasbourg, France <- CCUG <- CNCTC <- Neubauer

doi: 10.13145/bacdive3166.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium accolens
  • full scientific name: Corynebacterium accolens Neubauer et al. 1991

@ref: 11644

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium accolens

full scientific name: Corynebacterium accolens Neubauer et al. 1991 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.286
69480100positive
115988nopositiverod-shaped

colony morphology

@refcolony colorincubation periodmedium used
19643Light ivory10-14 daysISP 2
1964310-14 daysISP 3
19643Light ivory10-14 daysISP 7
115988

multicellular morphology

@refforms multicellular complexmedium name
19643noISP 2
19643noISP 3
19643noISP 4
19643noISP 5
19643noISP 6
19643noISP 7

multimedia

  • @ref: 11644
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44278.jpg
  • caption: Medium 693 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11644COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
11644TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)yeshttps://mediadive.dsmz.de/medium/535aName: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
19643ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19643ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19643ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
115988CIP Medium 4yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=4
115988CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
19643positiveoptimum37mesophilic
11644positivegrowth37mesophilic
49372positivegrowth37mesophilic
67770positivegrowth37mesophilic
115988positivegrowth30-41
115988nogrowth10psychrophilic
115988nogrowth15psychrophilic
115988nogrowth25mesophilic
115988nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49372
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.995

halophily

@refsaltgrowthtested relationconcentration
19643NaClpositivemaximum2.5 %
115988NaClpositivegrowth0-6 %
115988NaClnogrowth8 %
115988NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
229114853esculin-hydrolysis
2291117234glucose+builds acid from
2291117306maltose+builds acid from
2291133942ribose+builds acid from
2291117992sucrose-builds acid from
2291118222xylose-builds acid from
2291117632nitrate+reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
11598816947citrate-carbon source
1159884853esculin-hydrolysis
115988606565hippurate-hydrolysis
11598817632nitrate+reduction
11598816301nitrite-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

antibiotic resistance

  • @ref: 115988
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 115988
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 115988
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
22911acid phosphatase-3.1.3.2
22911alkaline phosphatase-3.1.3.1
22911cystine arylamidase-3.4.11.3
22911esterase (C 4)+/-
22911esterase Lipase (C 8)+
22911leucine arylamidase+3.4.11.1
22911lipase (C 14)+
22911pyrazinamidase-3.5.1.B15
22911pyrrolidonyl arylamidase+3.4.19.3
22911trypsin+/-3.4.21.4
22911valine arylamidase-
22911urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382esterase lipase (C 8)+
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrazinamidase-3.5.1.B15
115988oxidase-
115988beta-galactosidase-3.2.1.23
115988alcohol dehydrogenase-1.1.1.1
115988gelatinase-
115988amylase-
115988DNase+/-
115988caseinase-3.4.21.50
115988catalase+1.11.1.6
115988tween esterase+/-
115988gamma-glutamyltransferase-2.3.2.2
115988lecithinase-
115988lipase-
115988lysine decarboxylase-4.1.1.18
115988ornithine decarboxylase-4.1.1.17
115988phenylalanine ammonia-lyase-4.3.1.24
115988tryptophan deaminase-
115988urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYGControlCAT
19643-------------------
11644+-+--------++-------+

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19643--+----------------
115988+++-+----++---+-----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
115988+---+-----+++--------------+-------++--+------+/---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11644human cervixHavlickuv, BrodCzech RepublicCZEEurope
49372Human clinical specimenEurope
67770Human cervixCzech RepublicCZEEurope

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body-Site#Urogenital tract
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_1494.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_322;97_358;98_897;99_1494&stattab=map
  • Last taxonomy: Corynebacterium accolens subclade
  • 16S sequence: X80500
  • Sequence Identity:
  • Total samples: 9102
  • soil counts: 201
  • aquatic counts: 330
  • animal counts: 8517
  • plant counts: 54

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
116442Risk group (German classification)
196432Risk group (German classification)
1159882Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Corynebacterium accolens 16S rDNAX805001393ena38284
20218Corynebacterium accolens gene for 16S rRNA, partial sequenceAB470621545ena38284
11644Corynebacterium accolens partial 16S rRNA gene, strain ATCC 49725TAJ4393461505ena38284

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium accolens ATCC 49725525260.4wgspatric525260
66792Corynebacterium accolens ATCC 49725643886058draftimg525260
67770Corynebacterium accolens ATCC 49725GCA_000159115scaffoldncbi525260
66792Corynebacterium accolens DSM 44278GCA_023520795completencbi38284

GC content

  • @ref: 67770
  • GC-content: 59.7
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno98.048no
gram-positiveyes95.13no
anaerobicno99.308yes
aerobicno81.406yes
halophileyes89.462no
spore-formingno95.521no
motileno94.444no
glucose-fermentyes78.828no
thermophileno94.521yes
glucose-utilyes87.861no

External links

@ref: 11644

culture collection no.: DSM 44278, ATCC 49725, CCUG 28779, CNCTC Th1/57, LMG 19042, JCM 8331, CGMCC 1.1940, CIP 104783, KCTC 3431

straininfo link

  • @ref: 72682
  • straininfo: 97597

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11644Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44278)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44278
19643Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44278.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
22911Vicky Merhej, Enevold Falsen, Didier Raoult, Véronique Roux10.1099/ijs.0.005827-0Corynebacterium timonense sp. nov. and Corynebacterium massiliense sp. nov., isolated from human blood and human articular hip fluidIJSEM 59: 1953-1959 200919567562
49372Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 28779)https://www.ccug.se/strain?id=28779
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72682Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID97597.1StrainInfo: A central database for resolving microbial strain identifiers
115988Curators of the CIPCollection of Institut Pasteur (CIP 104783)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104783