Strain identifier

BacDive ID: 3160

Type strain: No

Species: Corynebacterium coyleae

Strain history: CIP <- 1996, G. Funke, Inst. Med. Microbiol., Zürich, Switzerland: strain DMMZ 1075

NCBI tax ID(s): 53374 (species)

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General

@ref: 11583

BacDive-ID: 3160

DSM-Number: 44185

keywords: genome sequence, Bacteria, obligate anaerobe, mesophilic

description: Corynebacterium coyleae DSM 44185 is an obligate anaerobe, mesophilic bacterium that was isolated from human blood culture.

NCBI tax id

  • NCBI tax id: 53374
  • Matching level: species

strain history

@refhistory
11583<- G. Funke, DMMZ 1075
391401996, G. Funke, Inst. Med. Microbiol., Zürich, Switzerland: strain DMMZ 1075
118775CIP <- 1996, G. Funke, Inst. Med. Microbiol., Zürich, Switzerland: strain DMMZ 1075

doi: 10.13145/bacdive3160.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium coyleae
  • full scientific name: Corynebacterium coyleae Funke et al. 1997

@ref: 11583

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium coyleae

full scientific name: Corynebacterium coyleae Funke et al. 1997

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no97.094
69480100positive
118775nopositiverod-shaped

colony morphology

  • @ref: 118775

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11583TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
39140MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
118775CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
11583positivegrowth37mesophilic
39140positivegrowth37mesophilic
118775positivegrowth25-41
118775nogrowth10psychrophilic
118775nogrowth15psychrophilic
118775nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
11583obligate anaerobe
118775facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

halophily

  • @ref: 118775
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
118775citrate-carbon source16947
118775esculin-hydrolysis4853
118775hippurate+hydrolysis606565
118775nitrate+reduction17632
118775nitrite-reduction16301
118775nitrate+respiration17632

antibiotic resistance

  • @ref: 118775
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 118775
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11877515688acetoin-
11877517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
118775oxidase-
118775beta-galactosidase-3.2.1.23
118775alcohol dehydrogenase-1.1.1.1
118775gelatinase-
118775amylase-
118775DNase-
118775caseinase-3.4.21.50
118775catalase+1.11.1.6
118775tween esterase-
118775gamma-glutamyltransferase-2.3.2.2
118775lecithinase-
118775lipase-
118775lysine decarboxylase-4.1.1.18
118775ornithine decarboxylase-4.1.1.17
118775phenylalanine ammonia-lyase-4.3.1.24
118775tryptophan deaminase-
118775urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118775-+++-+-++-++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118775----+-----+++--------------+-------++--+---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118775++---++--+---------+------------------+---------++---------++------------+++--+++--------++++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
11583human blood cultureZürichSwitzerlandCHEEurope
118775Human, BloodZurichSwitzerlandCHEEurope1994

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Blood culture
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
115832Risk group (German classification)
1187752Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium coyleae strain FDAARGOS_149253374.55completepatric53374
66792Corynebacterium coyleae strain FDAARGOS_149253374.61completepatric53374
66792Corynebacterium coyleae strain FDAARGOS_149253374.59completepatric53374
66792Corynebacterium coyleae strain FDAARGOS_149253374.60completepatric53374

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes94.309no
anaerobicno98.202yes
halophileyes78.57no
spore-formingno94.081no
glucose-utilyes82.001no
thermophileno94.828yes
motileno92.935no
flagellatedno96.665no
aerobicno59.978no
glucose-fermentno57.116no

External links

@ref: 11583

culture collection no.: DSM 44185, CCUG 35015, DMMZ 1075, CIP 104920

straininfo link

  • @ref: 72676
  • straininfo: 50513

Reference

@idauthorscataloguedoi/urltitle
11583Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44185)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44185
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39140Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16882
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72676Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50513.1StrainInfo: A central database for resolving microbial strain identifiers
118775Curators of the CIPCollection of Institut Pasteur (CIP 104920)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104920