Strain identifier
BacDive ID: 316
Type strain: 
Species: Achromobacter denitrificans
Strain history: <- NCIB, Alcaligenes denitrificans subsp. denitrificans
NCBI tax ID(s): 32002 (species)
version 8.1 (current version)
General
@ref: 1802
BacDive-ID: 316
DSM-Number: 4612
keywords: genome sequence, Bacteria, mesophilic, motile
description: Achromobacter denitrificans DSM 4612 is a mesophilic, motile bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 32002
- Matching level: species
strain history
- @ref: 1802
- history: <- NCIB, Alcaligenes denitrificans subsp. denitrificans
doi: 10.13145/bacdive316.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter denitrificans
- full scientific name: Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003
synonyms
@ref synonym 20215 Alcaligenes denitrificans 20215 Achromobacter xylosoxidans subsp. denitrificans 20215 Alcaligenes xylosoxidans subsp. denitrificans
@ref: 1802
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter denitrificans
full scientific name: Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.587 | |
| 69480 | 99.997 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1802 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 36487 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1802 | positive | growth | 30 | mesophilic |
| 36487 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.989 |
Safety information
risk assessment
- @ref: 1802
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Achromobacter denitrificans strain FDAARGOS_788
- accession: 32002.38
- assembly level: complete
- database: patric
- NCBI tax ID: 32002
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.445 | no |
| anaerobic | no | 98.568 | no |
| halophile | no | 86.902 | no |
| spore-forming | no | 94.003 | no |
| glucose-util | no | 67.783 | no |
| flagellated | no | 56.974 | no |
| aerobic | yes | 84.323 | no |
| thermophile | no | 99.644 | no |
| motile | yes | 88.719 | no |
| glucose-ferment | no | 89.417 | no |
External links
@ref: 1802
culture collection no.: DSM 4612, NCIB 11961
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1802 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4612) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4612 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 36487 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10927 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |