Strain identifier
BacDive ID: 316
Type strain: 
Species: Achromobacter denitrificans
Strain history: <- NCIB, Alcaligenes denitrificans subsp. denitrificans
NCBI tax ID(s): 32002 (species)
version 9.3 (current version)
General
@ref: 1802
BacDive-ID: 316
DSM-Number: 4612
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Achromobacter denitrificans DSM 4612 is a mesophilic, Gram-negative bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 32002
- Matching level: species
strain history
- @ref: 1802
- history: <- NCIB, Alcaligenes denitrificans subsp. denitrificans
doi: 10.13145/bacdive316.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter denitrificans
- full scientific name: Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003
synonyms
@ref synonym 20215 Alcaligenes denitrificans 20215 Achromobacter xylosoxidans subsp. denitrificans 20215 Alcaligenes xylosoxidans subsp. denitrificans
@ref: 1802
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter denitrificans
full scientific name: Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 96.682 |
| 125439 | negative | 94.1 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1802 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 36487 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 1802 | positive | growth | 30 |
| 36487 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: aerobe
- confidence: 92.6
spore formation
- @ref: 125439
- spore formation: no
- confidence: 94.5
Safety information
risk assessment
- @ref: 1802
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Achromobacter denitrificans strain FDAARGOS_788
- accession: 32002.38
- assembly level: complete
- database: patric
- NCBI tax ID: 32002
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.682 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.851 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.373 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.619 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.485 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 85.321 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 94.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 79.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 94.1 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 92.6 |
External links
@ref: 1802
culture collection no.: DSM 4612, NCIB 11961
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1802 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4612) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4612 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 36487 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10927 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |