Strain identifier

BacDive ID: 3159

Type strain: Yes

Species: Corynebacterium coyleae

Strain history: CIP <- 1996, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 214

NCBI tax ID(s): 53374 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11582

BacDive-ID: 3159

DSM-Number: 44184

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Corynebacterium coyleae CCUG 38194 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human blood culture.

NCBI tax id

  • NCBI tax id: 53374
  • Matching level: species

strain history

@refhistory
11582<- G. Funke, DMMZ 214, Universität Zürich (Dep. Med. Microbiology)
375581996, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 214
67770CCUG 38194 <-- G. Funke DMMZ 214.
118774CIP <- 1996, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 214

doi: 10.13145/bacdive3159.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium coyleae
  • full scientific name: Corynebacterium coyleae Funke et al. 1997

@ref: 11582

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium coyleae

full scientific name: Corynebacterium coyleae Funke et al. 1997

type strain: yes

Morphology

cell morphology

@refgram stainmotilitycell shape
23171positiveno
118774positivenorod-shaped

colony morphology

@refcolony colorincubation periodmedium usedcolony sizecolony shapehemolysis ability
20014Sand yellow (1002)10-14 daysISP 2
20014Sand yellow (1002)10-14 daysISP 3
20014Sand yellow (1002)10-14 daysISP 4
20014Sand yellow (1002)10-14 daysISP 5
20014Sand yellow (1002)10-14 daysISP 6
20014Sand yellow (1002)10-14 daysISP 7
23171slightly glistening1 daysheep blood agar1 mmcircular
1187741

multicellular morphology

@refmedium nameforms multicellular complex
20014ISP 2
20014ISP 3no
20014ISP 4no
20014ISP 5no
20014ISP 6no
20014ISP 7no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11582TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20014ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20014ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20014ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20014ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20014ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20014ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
23171sheep blood agaryes
37558MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
118774CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
20014positiveoptimum37mesophilic
11582positivegrowth37mesophilic
37558positivegrowth37mesophilic
54127positivegrowth37mesophilic
67770positivegrowth37mesophilic
118774positivegrowth25-41
118774nogrowth10psychrophilic
118774nogrowth15psychrophilic
118774nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23171anaerobe
54127aerobe
118774facultative anaerobe

spore formation

@refspore formation
20014no
23171no

halophily

  • @ref: 118774
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23171168082-dehydro-D-gluconate-builds acid from
2317115963ribitol-builds acid from
2317127613amygdalin-builds acid from
2317118305arbutin-builds acid from
2317117057cellobiose-builds acid from
2317117108D-arabinose-builds acid from
2317118333D-arabitol-builds acid from
2317128847D-fucose-builds acid from
2317162318D-lyxose-builds acid from
2317116634raffinose-builds acid from
2317116443D-tagatose-builds acid from
2317132528turanose-builds acid from
2317116813galactitol-builds acid from
2317117113erythritol-builds acid from
2317128260galactose-builds acid from
2317128066gentiobiose-builds acid from
2317124265gluconate-builds acid from
2317117754glycerol-builds acid from
2317128087glycogen-builds acid from
2317117268myo-inositol-builds acid from
2317115443inulin-builds acid from
2317130849L-arabinose-builds acid from
2317118403L-arabitol-builds acid from
2317118287L-fucose-builds acid from
2317117266L-sorbose-builds acid from
2317117716lactose-builds acid from
2317117306maltose-builds acid from
2317129864mannitol-builds acid from
231716731melezitose-builds acid from
2317128053melibiose-builds acid from
23171320061methyl alpha-D-glucopyranoside-builds acid from
2317143943methyl alpha-D-mannoside-builds acid from
2317174863methyl beta-D-xylopyranoside-builds acid from
23171506227N-acetylglucosamine-builds acid from
2317126546rhamnose-builds acid from
2317117814salicin-builds acid from
2317130911sorbitol-builds acid from
2317128017starch-builds acid from
2317117992sucrose-builds acid from
2317127082trehalose-builds acid from
2317117151xylitol-builds acid from
2317118222xylose-builds acid from
23171casein-hydrolysis
231714853esculin-hydrolysis
2317118186tyrosine-hydrolysis
2317116199urea-hydrolysis
2317115318xanthine-hydrolysis
2317117632nitrate-reduction
23171174265-dehydro-D-gluconate+builds acid from
2317115824D-fructose+builds acid from
2317116024D-mannose+builds acid from
2317117234glucose+builds acid from
2317133942ribose+builds acid from
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11877416947citrate-carbon source
1187744853esculin-hydrolysis
118774606565hippurate+hydrolysis
11877417632nitrate-reduction
11877416301nitrite-reduction
11877417632nitrate+respiration
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

antibiotic resistance

  • @ref: 118774
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 118774
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11877415688acetoin+
11877417234glucose-

enzymes

@refvalueactivityec
23171acid phosphatase+3.1.3.2
23171alkaline phosphatase+3.1.3.1
23171alpha-fucosidase-3.2.1.51
23171alpha-galactosidase-3.2.1.22
23171alpha-glucosidase-3.2.1.20
23171alpha-mannosidase-3.2.1.24
23171beta-galactosidase-3.2.1.23
23171beta-glucosidase-3.2.1.21
23171beta-glucuronidase-3.2.1.31
23171catalase+1.11.1.6
23171chymotrypsin-3.4.4.5
23171cystine arylamidase+3.4.11.3
23171esterase (C 4)+
23171esterase lipase (C 8)+
23171leucine arylamidase+3.4.11.1
23171N-acetyl-beta-glucosaminidase-3.2.1.52
23171phosphoamidase+3.9.1.1
23171pyrazinamidase+3.5.1.B15
23171pyrrolidonyl arylamidase+/-3.4.19.3
23171valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
118774oxidase-
118774beta-galactosidase-3.2.1.23
118774alcohol dehydrogenase-1.1.1.1
118774gelatinase-
118774amylase-
118774DNase-
118774caseinase-3.4.21.50
118774catalase-1.11.1.6
118774tween esterase-
118774gamma-glutamyltransferase-2.3.2.2
118774lecithinase-
118774lysine decarboxylase-4.1.1.18
118774ornithine decarboxylase-4.1.1.17
118774phenylalanine ammonia-lyase-4.3.1.24
118774tryptophan deaminase-
118774urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
20014---+---------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
20014+++-+----++--------
118774+-+-+----++---------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118774----+-----+++-------------++--------+/---+---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118774++---++------------+------------------+---------++---+-------------------++---+++-----+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
11582human blood cultureZürichSwitzerlandCHEEurope
23171human clinical specimens
54127Human blood,30-yr-old male patientZürichSwitzerlandCHEEurope1992
67770Blood culture (a 30 year-old man infected with the human immunodeficiency virus)ZurichSwitzerlandCHEEurope
118774Human, BloodZurichSwitzerlandCHEEurope1992

isolation source categories

Cat1Cat2Cat3
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen
#Host#Human

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
115822Risk group (German classification)
200142German classification
1187742Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Corynebacterium coyleae 16S ribosomal RNA gene, partial sequenceAY438052420ena53374
23171Corynebacterium coyleae 16S rRNA gene, type strain DSM 44184TX964971483nuccore53374

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium coyleae strain DSM 4418453374.4wgspatric53374
66792Corynebacterium coyleae strain FDAARGOS 142553374.54completepatric53374
66792Corynebacterium coyleae DSM 441842634166170draftimg53374
67770Corynebacterium coyleae DSM 44184GCA_900105505contigncbi53374

GC content

@refGC-contentmethod
2317162.0
6777062high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes93.679yes
anaerobicno98.562no
halophileyes74.182no
spore-formingno93.171no
glucose-utilyes81.925no
thermophileno94.022no
motileno93.566yes
flagellatedno96.411no
aerobicno64.549no
glucose-fermentno52.13no

External links

@ref: 11582

culture collection no.: CCUG 38194, LMG 19044, CIP 104919, JCM 10381, DSM 44184, CCUG 35014, DMMZ 214, ATCC 700219, CCM 4669

straininfo link

  • @ref: 72675
  • straininfo: 12970

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8995809Corynebacterium coyleae sp. nov., isolated from human clinical specimens.Funke G, Ramos CP, Collins MDInt J Syst Bacteriol10.1099/00207713-47-1-921997Adult, Aged, Bacteriological Techniques, Base Composition, Corynebacterium/chemistry/genetics/*isolation & purification/metabolism, Corynebacterium Infections/*microbiology, Culture Media/metabolism, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Female, Fermentation, Glucose/metabolism, Humans, Male, Maltose/metabolism, Microbial Sensitivity Tests, Molecular Sequence Data, Mycolic Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sucrose/metabolismMetabolism
Phylogeny34846289Corynebacterium zhongnanshanii sp. nov. isolated from trachea of Marmota himalayana, Corynebacterium lujinxingii sp. nov. and Corynebacterium wankanglinii sp. nov. from human faeces.Zhang G, Yang J, Lai XH, Jin D, Lu S, Ren Z, Qin T, Pu J, Ge Y, Cheng Y, Yang C, Lv X, Jiao Y, Huang Y, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0050692021Animals, Bacterial Typing Techniques, Base Composition, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Marmota/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Trachea/microbiology, Vitamin K 2/analogs & derivatives/chemistryPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11582Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44184)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44184
20014Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44184.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23171GUIDO FUNKE, CRISTINA PASCUAL RAMOS, MATTHEW D. COLLINS10.1099/00207713-47-1-92Corynebacterium coyleae sp. nov., Isolated from Human Clinical SpecimensIJSEM 47: 92-96 19978995809
37558Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16881
54127Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38194)https://www.ccug.se/strain?id=38194
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
72675Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12970.1StrainInfo: A central database for resolving microbial strain identifiers
118774Curators of the CIPCollection of Institut Pasteur (CIP 104919)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104919