Strain identifier
BacDive ID: 3147
Type strain:
Species: Corynebacterium ulcerans
Strain Designation: 20184
Strain history: CIP <- 2000, CCUG <- NCTC, London, UK <- W.H.H. Jebb, PHLS, Oxford, UK: strain 20184
NCBI tax ID(s): 65058 (species)
General
@ref: 12523
BacDive-ID: 3147
DSM-Number: 46325
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped, human pathogen
description: Corynebacterium ulcerans 20184 is a microaerophile, mesophilic, Gram-positive human pathogen that was isolated from human throat.
NCBI tax id
- NCBI tax id: 65058
- Matching level: species
strain history
@ref | history |
---|---|
12523 | <- IMET; IMET 11148 <- CCUG; CCUG 2708 <- NCTC; NCTC 7910 <- W.H.H. Jebb; |
67770 | CCUG 2708 <-- NCTC 7910 <-- W. H. H. Jebb. |
123709 | CIP <- 2000, CCUG <- NCTC, London, UK <- W.H.H. Jebb, PHLS, Oxford, UK: strain 20184 |
doi: 10.13145/bacdive3147.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium ulcerans
- full scientific name: Corynebacterium ulcerans (ex Gilbert and Stewart 1927) Riegel et al. 1995
@ref: 12523
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium ulcerans
full scientific name: Corynebacterium ulcerans (ex Gilbert and Stewart 1927) Riegel et al. 1995
strain designation: 20184
type strain: yes
Morphology
cell morphology
- @ref: 123709
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19720 | Ivory | 10-14 days | ISP 2 |
19720 | Ivory | 10-14 days | ISP 3 |
19720 | Ivory | 10-14 days | ISP 4 |
19720 | Ivory | 10-14 days | ISP 5 |
19720 | Ivory | 10-14 days | ISP 6 |
19720 | Ivory | 10-14 days | ISP 7 |
123709 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
19720 | no | ISP 2 |
19720 | no | ISP 3 |
19720 | no | ISP 4 |
19720 | no | ISP 5 |
19720 | no | ISP 6 |
19720 | no | ISP 7 |
multimedia
- @ref: 12523
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46325.jpg
- caption: Medium 693 37°C
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
12523 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
19720 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19720 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19720 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19720 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
19720 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19720 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
39544 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
12523 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
123709 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19720 | positive | optimum | 37 | mesophilic |
12523 | positive | growth | 37 | mesophilic |
39544 | positive | growth | 37 | mesophilic |
44579 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
123709 | positive | growth | 25-41 | |
123709 | no | growth | 10 | psychrophilic |
123709 | no | growth | 15 | psychrophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44579 | microaerophile |
123709 | facultative anaerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123709 | NaCl | positive | growth | 0-2 % |
123709 | NaCl | no | growth | 4 % |
123709 | NaCl | no | growth | 6 % |
123709 | NaCl | no | growth | 8 % |
123709 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
123709 | citrate | - | carbon source | 16947 |
123709 | esculin | - | hydrolysis | 4853 |
123709 | hippurate | - | hydrolysis | 606565 |
123709 | nitrate | - | reduction | 17632 |
123709 | nitrite | - | reduction | 16301 |
123709 | nitrate | + | respiration | 17632 |
68379 | nitrate | - | reduction | 17632 |
68379 | esculin | - | hydrolysis | 4853 |
68379 | urea | + | hydrolysis | 16199 |
68379 | gelatin | - | hydrolysis | 5291 |
68379 | D-glucose | + | fermentation | 17634 |
68379 | D-ribose | + | fermentation | 16988 |
68379 | D-xylose | - | fermentation | 65327 |
68379 | D-mannitol | - | fermentation | 16899 |
68379 | maltose | + | fermentation | 17306 |
68379 | lactose | - | fermentation | 17716 |
68379 | sucrose | - | fermentation | 17992 |
metabolite production
- @ref: 123709
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
123709 | 15688 | acetoin | - | |
123709 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
123709 | oxidase | - | |
123709 | beta-galactosidase | - | 3.2.1.23 |
123709 | alcohol dehydrogenase | - | 1.1.1.1 |
123709 | gelatinase | - | |
123709 | amylase | - | |
123709 | DNase | - | |
123709 | caseinase | - | 3.4.21.50 |
123709 | catalase | + | 1.11.1.6 |
123709 | tween esterase | - | |
123709 | gamma-glutamyltransferase | - | 2.3.2.2 |
123709 | lecithinase | - | |
123709 | lipase | - | |
123709 | lysine decarboxylase | - | 4.1.1.18 |
123709 | ornithine decarboxylase | - | 4.1.1.17 |
123709 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
123709 | protease | - | |
123709 | tryptophan deaminase | - | |
123709 | urease | + | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | Control | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19720 | - | - | - | + | - | - | - | - | - | + | - | + | + | - | - | + | - | - | + | ||
12523 | - | - | - | + | - | - | + | + | - | + | - | + | + | - | - | + | - | - | + | - | + |
12523 | - | - | - | + | - | - | + | - | - | + | - | + | + | - | - | + | - | - | +/- | - | + |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19720 | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - | |
123709 | + | + | + | - | + | - | - | + | - | + | + | - | - | - | + | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123709 | + | - | - | - | + | - | - | - | - | +/- | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | +/- | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123709 | + | + | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | + | - | - | - | + | + | - | - | - | - | - | + | - | - | + | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
12523 | human throat | |||||
44579 | Human throat | 1948 | ||||
67770 | Human throat | United Kingdom | GBR | Europe | ||
123709 | Human, Throat | United Kingdom | GBR | Europe | 1948 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Oral cavity and airways | #Throat |
taxonmaps
- @ref: 69479
- File name: preview.99_248.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_101;97_108;98_117;99_248&stattab=map
- Last taxonomy: Corynebacterium
- 16S sequence: X84256
- Sequence Identity:
- Total samples: 30067
- soil counts: 2353
- aquatic counts: 2458
- animal counts: 24362
- plant counts: 894
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
12523 | yes | yes | 2 | Risk group (German classification) |
19720 | 2 | Risk group (German classification) | ||
123709 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Corynebacterium ulcerans strain ATCC 51799 16S ribosomal RNA gene, partial sequence | GQ118345 | 1442 | ena | 65058 |
20218 | C.ulcerans 16S rRNA gene (CCUG 2708) | X81911 | 1395 | ena | 1717 |
20218 | Corynebacterium ulcerans 16S ribosomal RNA gene, partial sequence | AY438065 | 418 | ena | 65058 |
20218 | Corynebacterium ulcerans 16S rRNA gene, strain NCTC 7910 | X84256 | 1490 | ena | 65058 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Corynebacterium ulcerans NCTC7910 | GCA_900187135 | complete | ncbi | 65058 |
66792 | Corynebacterium ulcerans strain FDAARGOS_1118 | 65058.478 | complete | patric | 65058 |
66792 | Corynebacterium ulcerans strain NCTC7910 | 65058.133 | complete | patric | 65058 |
66792 | Corynebacterium ulcerans NCTC 7910 | 2848159128 | complete | img | 65058 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 53.2 | thermal denaturation, midpoint method (Tm) |
67770 | 53 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.009 | no |
flagellated | no | 97.124 | no |
gram-positive | yes | 93.814 | no |
anaerobic | no | 98.89 | yes |
aerobic | no | 80.867 | yes |
halophile | yes | 73.797 | no |
spore-forming | no | 92.658 | no |
thermophile | no | 93.661 | yes |
glucose-util | yes | 87.887 | no |
glucose-ferment | yes | 72.888 | no |
External links
@ref: 12523
culture collection no.: ATCC 51799, LMG 19058, DSM 46325, CCUG 2708, IMET 11148, NCTC 7910, PCM 554, JCM 10387, CIP 106504
straininfo link
- @ref: 72663
- straininfo: 12977
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 7729671 | Taxonomy of Corynebacterium diphtheriae and related taxa, with recognition of Corynebacterium ulcerans sp. nov. nom. rev. | Riegel P, Ruimy R, de Briel D, Prevost G, Jehl F, Christen R, Monteil H | FEMS Microbiol Lett | 10.1111/j.1574-6968.1995.tb07429.x | 1995 | Base Composition, Carbohydrate Metabolism, Corynebacterium/*classification/genetics/metabolism, Corynebacterium diphtheriae/*classification/genetics/metabolism, Corynebacterium pseudotuberculosis/classification/genetics/metabolism, DNA, Bacterial/analysis, Energy Metabolism, Molecular Sequence Data, Nitrates/metabolism, Phylogeny | Metabolism |
Phylogeny | 31310200 | Classification of three corynebacterial strains isolated from the Northern Bald Ibis (Geronticus eremita): proposal of Corynebacterium choanae sp. nov., Corynebacterium pseudopelargi sp. nov., and Corynebacterium gerontici sp. nov. | Busse HJ, Kleinhagauer T, Glaeser SP, Spergser J, Kampfer P, Ruckert C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003580 | 2019 | Animals, Bacterial Typing Techniques, Base Composition, Birds/*microbiology, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Nasal Cavity/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
12523 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46325) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46325 | |||
19720 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM46325.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39544 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18641 | ||||
44579 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 2708) | https://www.ccug.se/strain?id=2708 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72663 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12977.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123709 | Curators of the CIP | Collection of Institut Pasteur (CIP 106504) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106504 |