Strain identifier
BacDive ID: 3138
Type strain: 
Species: Corynebacterium amycolatum
Strain Designation: PAP 272, Co272
Strain history: <- G. Wauters, UCL, Brüssel, Co 272<- B. Van Bosterhaut
NCBI tax ID(s): 43765 (species)
version 9.3 (current version)
General
@ref: 11714
BacDive-ID: 3138
DSM-Number: 44373
keywords: genome sequence, Bacteria, Gram-positive, human pathogen
description: Corynebacterium amycolatum PAP 272 is a Gram-positive human pathogen that was isolated from skin.
NCBI tax id
- NCBI tax id: 43765
- Matching level: species
strain history
- @ref: 11714
- history: <- G. Wauters, UCL, Brüssel, Co 272<- B. Van Bosterhaut
doi: 10.13145/bacdive3138.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium amycolatum
- full scientific name: Corynebacterium amycolatum Collins et al. 1988
@ref: 11714
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium amycolatum
full scientific name: Corynebacterium amycolatum Collins et al. 1988
strain designation: PAP 272, Co272
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 91.5 | |
| 125438 | 91.38 | positive |
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68379 | 28087 | glycogen | - | fermentation |
| 68379 | 17992 | sucrose | - | fermentation |
| 68379 | 17716 | lactose | - | fermentation |
| 68379 | 17306 | maltose | + | fermentation |
| 68379 | 17634 | D-glucose | + | fermentation |
| 68379 | 16988 | D-ribose | + | fermentation |
| 68379 | 5291 | gelatin | - | hydrolysis |
| 68379 | 16199 | urea | + | hydrolysis |
| 68379 | 16899 | D-mannitol | - | fermentation |
| 68379 | 65327 | D-xylose | - | fermentation |
| 68379 | 4853 | esculin | - | hydrolysis |
| 68379 | 17632 | nitrate | - | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68379 | beta-glucosidase | - | 3.2.1.21 |
| 68379 | alkaline phosphatase | + | 3.1.3.1 |
| 68379 | catalase | + | 1.11.1.6 |
| 68379 | gelatinase | - | |
| 68379 | urease | + | 3.5.1.5 |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68379 | alpha-glucosidase | - | 3.2.1.20 |
| 68379 | beta-galactosidase | - | 3.2.1.23 |
| 68379 | beta-glucuronidase | - | 3.2.1.31 |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68379 | pyrazinamidase | + | 3.5.1.B15 |
API coryne
| @ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11714 | - | + | - | + | - | - | - | - | - | + | - | - | + | + | - | - | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 11714
- sample type: skin
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Organ
- Cat3: #Skin, Nail, Hair
Safety information
risk assessment
- @ref: 11714
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Corynebacterium amycolatum strain FDAARGOS_1108
- accession: 43765.99
- assembly level: complete
- database: patric
- NCBI tax ID: 43765
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.38 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.858 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79.734 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 70.33 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.863 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91.5 | no |
External links
@ref: 11714
culture collection no.: DSM 44373
straininfo link
- @ref: 72655
- straininfo: 50598
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11714 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44373) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44373 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 68379 | Automatically annotated from API Coryne | |||
| 72655 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50598.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets |