Strain identifier
BacDive ID: 3137
Type strain: 
Species: Corynebacterium amycolatum
Strain Designation: PAP 232, Co 232
Strain history: <- G. Wauters, UCL, Brüssel, Co 232 <- J. Verhaegen
NCBI tax ID(s): 43765 (species)
version 9.3 (current version)
General
@ref: 11713
BacDive-ID: 3137
DSM-Number: 44372
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Corynebacterium amycolatum PAP 232 is a mesophilic human pathogen that was isolated from bursite.
NCBI tax id
- NCBI tax id: 43765
- Matching level: species
strain history
- @ref: 11713
- history: <- G. Wauters, UCL, Brüssel, Co 232 <- J. Verhaegen
doi: 10.13145/bacdive3137.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium amycolatum
- full scientific name: Corynebacterium amycolatum Collins et al. 1988
@ref: 11713
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium amycolatum
full scientific name: Corynebacterium amycolatum Collins et al. 1988
strain designation: PAP 232, Co 232
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 98.9 | |
| 125439 | 95.5 | no | |
| 125438 | 93.5 | no | |
| 125438 | positive | 91.064 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11713 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 11713 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 11713
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 93.6
Isolation, sampling and environmental information
isolation
- @ref: 11713
- sample type: bursite
isolation source categories
- Cat1: #Infection
- Cat2: #Inflammation
Safety information
risk assessment
- @ref: 11713
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Corynebacterium amycolatum strain FDAARGOS_938
- accession: 43765.80
- assembly level: complete
- database: patric
- NCBI tax ID: 43765
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.064 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.039 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 78.932 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 69.298 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.238 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 93.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 95.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 86.8 |
External links
@ref: 11713
culture collection no.: DSM 44372
straininfo link
- @ref: 72654
- straininfo: 50597
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11713 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44372) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44372 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 72654 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50597.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |