Strain identifier

BacDive ID: 3130

Type strain: No

Species: Corynebacterium xerosis

Strain history: K. Suzuki CNF 010 <-- AJ 1396 <-- ATCC 7711 <-- Univ. Maryland, USA.

NCBI tax ID(s): 1725 (species)

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General

@ref: 8601

BacDive-ID: 3130

DSM-Number: 20170

keywords: 16S sequence, Bacteria, aerobe, mesophilic, animal pathogen

description: Corynebacterium xerosis DSM 20170 is an aerobe, mesophilic animal pathogen of the family Corynebacteriaceae.

NCBI tax id

  • NCBI tax id: 1725
  • Matching level: species

strain history

@refhistory
8601<- ATCC <- Univ. Maryland
67770K. Suzuki CNF 010 <-- AJ 1396 <-- ATCC 7711 <-- Univ. Maryland, USA.

doi: 10.13145/bacdive3130.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium xerosis
  • full scientific name: Corynebacterium xerosis (Lehmann and Neumann 1896) Lehmann and Neumann 1899 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus xerosis

@ref: 8601

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium xerosis

full scientific name: Corynebacterium xerosis (Lehmann and Neumann 1896) Lehmann and Neumann 1899 emend. Nouioui et al. 2018

type strain: no

Morphology

multimedia

  • @ref: 8601
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_20170.jpg
  • caption: Medium 535a 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 8601
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8601positivegrowth28mesophilic
56708positivegrowth37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56708
  • oxygen tolerance: aerobe

murein

  • @ref: 8601
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56708C16:019.916
    56708C17:06.717
    56708C18:08.218
    56708C16:1 ω9c1.915.774
    56708C17:0 anteiso2.116.722
    56708C17:1 ω8c5.316.792
    56708C18:1 ω9c40.617.769
    56708C18:2 ω6,9c/C18:0 ANTE15.317.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
56708-+-+--+-----++--+-+-+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
56708-+++++---------+----

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_879.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_525;97_604;98_694;99_879&stattab=map
  • Last taxonomy: Corynebacterium striatum
  • 16S sequence: X81906
  • Sequence Identity:
  • Total samples: 15392
  • soil counts: 471
  • aquatic counts: 540
  • animal counts: 14155
  • plant counts: 226

Safety information

risk assessment

  • @ref: 8601
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: C.xerosis 16S rRNA gene (IAM 12431)
  • accession: X81906
  • length: 1324
  • database: ena
  • NCBI tax ID: 1725

GC content

@refGC-contentmethod
860168.5
6777068.5thermal denaturation, midpoint method (Tm)

External links

@ref: 8601

culture collection no.: DSM 20170, ATCC 7711, CCUG 45245, IAM 12431, JCM 1324, KCTC 9105

straininfo link

  • @ref: 72647
  • straininfo: 34882

literature

  • topic: Phylogeny
  • Pubmed-ID: 8727888
  • title: Most Corynebacterium xerosis strains identified in the routine clinical laboratory correspond to Corynebacterium amycolatum.
  • authors: Funke G, Lawson PA, Bernard KA, Collins MD
  • journal: J Clin Microbiol
  • DOI: 10.1128/jcm.34.5.1124-1128.1996
  • year: 1996
  • mesh: Bacterial Typing Techniques/standards, Bacteriological Techniques/standards, Corynebacterium/*classification/genetics/metabolism, Corynebacterium Infections/diagnosis, Drug Resistance, Microbial, Genes, Bacterial, Humans, Phenotype, Polymerase Chain Reaction, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Reference Standards, Species Specificity
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
8601Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20170)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20170
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
56708Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45245)https://www.ccug.se/strain?id=45245
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72647Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID34882.1StrainInfo: A central database for resolving microbial strain identifiers