Strain identifier
BacDive ID: 3115
Type strain: 
Species: Corynebacterium renale
Strain Designation: 5
Strain history: R. Yanagawa <-- ATCC 10848 <-- E. V. Morse 5.
NCBI tax ID(s): 1724 (species)
version 8.1 (current version)
General
@ref: 8701
BacDive-ID: 3115
DSM-Number: 20298
keywords: genome sequence, Bacteria, mesophilic, animal pathogen
description: Corynebacterium renale 5 is a mesophilic animal pathogen that was isolated from cattle with pyelonephritis.
NCBI tax id
- NCBI tax id: 1724
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8701 | <- H.G. Schlegel <- K. Komagata <- ATCC <- E.V. Morse, 5 |
| 67770 | K. Suzuki CNF 009 <-- AJ 1411 <-- ATCC 10848 <-- E. V. Morse 5. |
| 67770 | R. Yanagawa <-- ATCC 10848 <-- E. V. Morse 5. |
doi: 10.13145/bacdive3115.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium renale
- full scientific name: Corynebacterium renale (Migula 1900) Ernst 1906 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium renale
@ref: 8701
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium renale
full scientific name: Corynebacterium renale (Migula 1900) Ernst 1906 emend. Nouioui et al. 2018
strain designation: 5
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 97.787 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 8701
- name: CORYNEBACTERIUM AGAR (DSMZ Medium 53)
- growth: yes
- link: https://mediadive.dsmz.de/medium/53
- composition: Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8701 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 98 |
| 69480 | no | 99.949 |
murein
- @ref: 8701
- murein short key: A31
- type: A1gamma m-Dpm-direct
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 8701 | cattle with pyelonephritis | ||||
| 67770 | Cattle with pyelonephritis | New York | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Urogenital tract | #Kidney |
Safety information
risk assessment
- @ref: 8701
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium renale NCTC11140 | GCA_900475655 | complete | ncbi | 1724 |
| 66792 | Corynebacterium renale strain NCTC11140 | 1724.10 | complete | patric | 1724 |
| 66792 | Corynebacterium renale NCTC 11140 | 2808606771 | complete | img | 1724 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 8701 | 59.3 | |
| 67770 | 59.3 | thermal denaturation, midpoint method (Tm) |
| 67770 | 57.4 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| flagellated | no | 97.572 | no |
| gram-positive | yes | 92.579 | no |
| anaerobic | no | 98.7 | no |
| aerobic | no | 79.524 | no |
| halophile | yes | 84.592 | no |
| spore-forming | no | 93.927 | no |
| thermophile | no | 96.606 | yes |
| glucose-util | yes | 86.301 | no |
| motile | no | 95.228 | no |
| glucose-ferment | yes | 67.73 | no |
External links
@ref: 8701
culture collection no.: DSM 20298, ATCC 10848, JCM 1322, IAM 12430, JCM 3713, NCCB 62001, NCTC 11140
straininfo link
- @ref: 72632
- straininfo: 35292
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8701 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20298) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20298 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 72632 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35292.1 | StrainInfo: A central database for resolving microbial strain identifiers |