Strain identifier
BacDive ID: 3103
Type strain: 
Species: Corynebacterium minutissimum
Strain history: <- ATCC <- NCTC
NCBI tax ID(s): 38301 (species)
version 8.1 (current version)
General
@ref: 3035
BacDive-ID: 3103
DSM-Number: 7174
keywords: genome sequence, Bacteria, mesophilic
description: Corynebacterium minutissimum DSM 7174 is a mesophilic bacterium that was isolated from toe web of female child.
NCBI tax id
- NCBI tax id: 38301
- Matching level: species
strain history
- @ref: 3035
- history: <- ATCC <- NCTC
doi: 10.13145/bacdive3103.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium minutissimum
- full scientific name: Corynebacterium minutissimum (ex Sarkany et al. 1962) Collins and Jones 1983
@ref: 3035
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium minutissimum
full scientific name: Corynebacterium minutissimum (ex Sarkany et al. 1962) Collins and Jones 1983 emend. Yassin et al. 2002 emend. Nouioui et al. 2018
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 97.141 | |
| 69480 | 100 | positive |
multimedia
- @ref: 3035
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_7174.jpg
- caption: Medium 535 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 3035
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 3035
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
- @ref: 3035
- sample type: toe web of female child
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Infection | #Patient | |
| #Host Body-Site | #Limb | #Foot |
| #Host | #Human | #Child |
| #Host | #Human | #Female |
Safety information
risk assessment
- @ref: 3035
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium minutissimum NCTC10285 | GCA_900637065 | complete | ncbi | 38301 |
| 66792 | Corynebacterium minutissimum strain FDAARGOS_992 | 38301.38 | complete | patric | 38301 |
| 66792 | Corynebacterium ulcerans strain NCTC10285 | 65058.162 | complete | patric | 65058 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.25 | no |
| gram-positive | yes | 95.855 | no |
| anaerobic | no | 99.389 | no |
| aerobic | no | 60.284 | no |
| halophile | yes | 80.545 | no |
| spore-forming | no | 94.615 | no |
| thermophile | no | 97.76 | yes |
| glucose-util | yes | 86.125 | no |
| motile | no | 94.569 | no |
| glucose-ferment | yes | 70.907 | no |
External links
@ref: 3035
culture collection no.: DSM 7174, ATCC 23347, NCTC 10285
straininfo link
- @ref: 72621
- straininfo: 38001
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3035 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7174) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7174 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 72621 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38001.1 | StrainInfo: A central database for resolving microbial strain identifiers |