Strain identifier

BacDive ID: 3079

Type strain: No

Species: Corynebacterium stationis

Strain history: ATCC 6872 <-- NCTC 2399 <-- J. V. Cooke.

NCBI tax ID(s): 1705 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8707

BacDive-ID: 3079

DSM-Number: 20305

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, amino acid production, human pathogen

description: Corynebacterium stationis DSM 20305 is a mesophilic human pathogen that produces amino acids and was isolated from stool of infant.

NCBI tax id

  • NCBI tax id: 1705
  • Matching level: species

strain history

@refhistory
8707<- H.G. Schlegel <- K. Komagata <- ATCC <- NCTC <- J.V. Cook
67770ATCC 6872 <-- NCTC 2399 <-- J. V. Cooke.

doi: 10.13145/bacdive3079.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium stationis
  • full scientific name: Corynebacterium stationis (ZoBell and Upham 1944) Bernard et al. 2010

  • synonyms

    @refsynonym
    20215Brevibacterium stationis
    20215Achromobacter stationis

@ref: 8707

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium stationis

full scientific name: Corynebacterium stationis (ZoBell and Upham 1944) Bernard et al. 2010

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.588
69480100positive

multimedia

  • @ref: 8707
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_20305.jpg
  • caption: Medium 693 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8707COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8707TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8707positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.989

compound production

@refcompound
8707ADP
8707ATP
8707flavin-adenine dinucleotide
87072-substituted-6,9-ß-D-ribofuranoside-5'-phosphoric hydroxypurine acid esters
87075' inosinic acid
8707L isoleucine
8707NADP
8707orotidylic acid
8707protein

murein

  • @ref: 8707
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample type
8707stool of infant
67770Stool of infant

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1113.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_652;97_755;98_874;99_1113&stattab=map
  • Last taxonomy: Corynebacterium stationis subclade
  • 16S sequence: FJ648509
  • Sequence Identity:
  • Total samples: 7824
  • soil counts: 533
  • aquatic counts: 368
  • animal counts: 6752
  • plant counts: 171

Safety information

risk assessment

  • @ref: 8707
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Corynebacterium stationis strain ATCC 6872 16S ribosomal RNA gene, partial sequence
  • accession: FJ648509
  • length: 1453
  • database: ena
  • NCBI tax ID: 1705

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium stationis ATCC 6872GCA_001561975completencbi1705
66792Corynebacterium stationis strain ATCC 68721705.3completepatric1705
66792Corynebacterium stationis ATCC 68722684623105completeimg1705

GC content

@refGC-contentmethod
870754.6
6777054.6thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno97.419no
gram-positiveyes91.403no
anaerobicno99.392no
aerobicyes75.29no
halophileyes83.649no
spore-formingno93.669no
thermophileno98.727yes
glucose-utilyes87.942no
motileno93.657no
glucose-fermentyes60.912no

External links

@ref: 8707

culture collection no.: DSM 20305, ATCC 6872, IAM 1645, NCTC 2399, JCM 1306, BCRC 11225, IFO 12072, KCCM 11741, KCTC 1019, NBRC 12072, NRRL B-4246

straininfo link

  • @ref: 72598
  • straininfo: 34803

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19661509Assignment of Brevibacterium stationis (ZoBell and Upham 1944) Breed 1953 to the genus Corynebacterium, as Corynebacterium stationis comb. nov., and emended description of the genus Corynebacterium to include isolates that can alkalinize citrate.Bernard KA, Wiebe D, Burdz T, Reimer A, Ng B, Singh C, Schindle S, Pacheco ALInt J Syst Evol Microbiol10.1099/ijs.0.012641-02009Aged, Bacterial Typing Techniques, Blood/microbiology, Brevibacterium/*classification, Citric Acid/*metabolism, Corynebacterium/*classification/genetics/*isolation & purification/metabolism, Corynebacterium Infections/*microbiology, Culture Media, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Female, Genes, rRNA, Genotype, Humans, Hydrogen-Ion Concentration, Male, Middle Aged, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Genetics26995608Complete genome sequence of nucleoside producing strain Corynebacterium stationis ATCC 6872.Liu Y, Yang J, Jiang Y, Yang SJ Biotechnol10.1016/j.jbiotec.2016.03.0262016Base Composition, Corynebacterium/*genetics, Genome Size, *Genome, Bacterial, Nucleosides/metabolism, Sequence Analysis, DNA/*methodsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8707Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20305)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20305
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72598Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID34803.1StrainInfo: A central database for resolving microbial strain identifiers