Strain identifier

BacDive ID: 3077

Type strain: Yes

Species: Adlercreutzia caecimuris

Strain Designation: B7

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; B7 <- W. Duck and C. Elson, Univ. Alabama at Birmingham (UAB), USA

NCBI tax ID(s): 671266 (species)

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General

@ref: 15982

BacDive-ID: 3077

DSM-Number: 21839

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Adlercreutzia caecimuris B7 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from cecum of mouse model of spontaneous colitis .

NCBI tax id

  • NCBI tax id: 671266
  • Matching level: species

strain history

  • @ref: 15982
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; B7 <- W. Duck and C. Elson, Univ. Alabama at Birmingham (UAB), USA

doi: 10.13145/bacdive3077.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Adlercreutzia
  • species: Adlercreutzia caecimuris
  • full scientific name: Adlercreutzia caecimuris (Clavel et al. 2010) Nouioui et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Enterorhabdus caecimuris

@ref: 15982

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Eggerthellaceae

genus: Adlercreutzia

species: Adlercreutzia caecimuris

full scientific name: Adlercreutzia caecimuris (Clavel et al. 2010) Nouioui et al. 2018

strain designation: B7

type strain: yes

Morphology

cell morphology

  • @ref: 29529
  • gram stain: positive
  • cell length: 2 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 61098
  • incubation period: 2-3 days

pigmentation

  • @ref: 29529
  • production: no

Culture and growth conditions

culture medium

  • @ref: 15982
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/339
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15982positivegrowth37mesophilic
29529positivegrowth27-40
29529positiveoptimum37mesophilic
61098positivegrowth37mesophilic

culture pH

@refabilitytypepH
29529positivegrowth7.2
29529positiveoptimum7.2

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15982anaerobe
29529anaerobe
61098anaerobe

spore formation

  • @ref: 29529
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29529NaClpositivegrowth0-2 %
29529NaClpositiveoptimum0-2 %

observation

  • @ref: 29529
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2952928260galactose+carbon source
2952917234glucose+carbon source
2952933942ribose+carbon source
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
15982-+----------+----------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15982cecum of mouse model of spontaneous colitis (C3H/HeJBir mouse)Birmingham, AlabamaUSAUSANorth America
61098Mouse intestineAlabama,BirminghamUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_401.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15800;96_272;97_300;98_334;99_401&stattab=map
  • Last taxonomy: Adlercreutzia caecimuris subclade
  • 16S sequence: DQ789120
  • Sequence Identity:
  • Total samples: 35590
  • soil counts: 213
  • aquatic counts: 380
  • animal counts: 34868
  • plant counts: 129

Sequence information

16S sequences

  • @ref: 15982
  • description: Enterorhabdus caecimuris strain B7 16S ribosomal RNA gene, partial sequence
  • accession: DQ789120
  • length: 1474
  • database: ena
  • NCBI tax ID: 1235794

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Adlercreutzia caecimuris B7GCA_000403355contigncbi1235794
66792Adlercreutzia caecimuris DSM 21839GCA_024623275contigncbi671266

GC content

@refGC-contentmethod
1598264.5high performance liquid chromatography (HPLC)
2952964.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.228no
flagellatedno98.622no
gram-positiveyes90.12yes
anaerobicyes98.889no
aerobicno95.998yes
halophileno88.409no
spore-formingno92.557yes
thermophileno99.029yes
glucose-utilyes60.261no
glucose-fermentno51.933no

External links

@ref: 15982

culture collection no.: DSM 21839, CCUG 56815

straininfo link

  • @ref: 72596
  • straininfo: 404406

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19684311Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009.Clavel T, Duck W, Charrier C, Wenning M, Elson C, Haller DInt J Syst Evol Microbiol10.1099/ijs.0.015016-02009Actinobacteria/*classification/genetics/isolation & purification/physiology, Animals, Base Sequence, Chromatography, High Pressure Liquid, Colitis/*microbiology, Lipids/analysis, Mice, Mice, Inbred C3H, Microbial Sensitivity Tests, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Spectroscopy, Fourier Transform InfraredGenetics
Phylogeny29583112Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut.Beltran D, Romo-Vaquero M, Espin JC, Tomas-Barberan FA, Selma MVInt J Syst Evol Microbiol10.1099/ijsem.0.0027352018Actinobacteria/*classification/genetics/isolation & purification, Adult, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/chemistry, Feces/microbiology, Gastrointestinal Tract/*microbiology, Glycolipids/chemistry, Humans, Male, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryPathogenicity

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15982Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21839)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21839
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29529Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2592628776041
61098Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56815)https://www.ccug.se/strain?id=56815
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72596Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404406.1StrainInfo: A central database for resolving microbial strain identifiers