Strain identifier

BacDive ID: 3077

Type strain: Yes

Species: Adlercreutzia caecimuris

Strain Designation: B7

Culture col. no.: DSM 21839, CCUG 56815

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15982

BacDive-ID: 3077

DSM-Number: 21839

keywords: mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence, gram-positive, rod-shaped

description: Adlercreutzia caecimuris B7 is an anaerobe, mesophilic, gram-positive bacterium that was isolated from cecum of mouse model of spontaneous colitis .

strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; B7 <- W. Duck and C. Elson, Univ. Alabama at Birmingham (UAB), USA

doi: 10.13145/bacdive3077.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Adlercreutzia
  • species: Adlercreutzia caecimuris
  • full scientific name: Adlercreutzia caecimuris (Clavel et al. 2010) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Enterorhabdus caecimuris

@ref: 15982

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Eggerthellaceae

genus: Adlercreutzia

species: Adlercreutzia caecimuris

full scientific name: Adlercreutzia caecimuris (Clavel et al. 2010) Nouioui et al. 2018

strain designation: B7

type strain: yes

Morphology

cell morphology

  • @ref: 29529
  • gram stain: positive
  • cell length: 2 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 61098
  • incubation period: 2-3 days

pigmentation

  • @ref: 29529
  • production: no

Culture and growth conditions

culture medium

  • @ref: 15982
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium339.pdf

culture temp

@refgrowthtypetemperaturerange
15982positivegrowth37mesophilic
29529positivegrowth27-40
29529positiveoptimum37mesophilic
61098positivegrowth37mesophilic

culture pH

@refabilitytypepH
29529positivegrowth7.2
29529positiveoptimum7.2

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15982anaerobe
29529anaerobe
61098anaerobe

spore formation

  • @ref: 29529
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29529NaClpositivegrowth0-2 %
29529NaClpositiveoptimum0-2 %

observation

  • @ref: 29529
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2952928260galactose+carbon source
2952917234glucose+carbon source
2952933942ribose+carbon source

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
15982-+----------+----------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15982cecum of mouse model of spontaneous colitis (C3H/HeJBir mouse)Birmingham, AlabamaUSAUSANorth America
61098Mouse intestineAlabama,BirminghamUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine

Sequence information

16S sequences

  • @ref: 15982
  • description: Enterorhabdus caecimuris strain B7 16S ribosomal RNA gene, partial sequence
  • accession: DQ789120
  • length: 1474
  • database: ena
  • NCBI tax ID: 1235794

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterorhabdus caecimuris NM80_B27GCA_004801615contigncbi671266
66792Enterorhabdus caecimuris 1xD42-21GCA_009917565contigncbi671266
66792Enterorhabdus caecimuris strain 1xD42-21671266.6wgspatric671266
66792Enterorhabdus caecimuris strain NM80_B27671266.5wgspatric671266

GC content

@refGC-contentmethod
1598264.5high performance liquid chromatography (HPLC)
2952964.5

External links

@ref: 15982

culture collection no.: DSM 21839, CCUG 56815

straininfo link

@refpassport
20218http://www.straininfo.net/strains/854983
20218http://www.straininfo.net/strains/854982

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
15982Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21839)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21839
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2592610.1099/ijs.0.015016-0
29529Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25926
61098Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56815)https://www.ccug.se/strain?id=56815
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)