Strain identifier

BacDive ID: 3073

Type strain: Yes

Species: Adlercreutzia equolifaciens

Strain Designation: FJC-B9

Strain history: <- CCUG <- Toshinari Maruo, FJC-B9

NCBI tax ID(s): 446660 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8024

BacDive-ID: 3073

DSM-Number: 19450

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, ovoid-shaped

description: Adlercreutzia equolifaciens FJC-B9 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faeces.

NCBI tax id

  • NCBI tax id: 446660
  • Matching level: species

strain history

@refhistory
8024<- Toshinari Maruo; FJC-B9
67770T. Maruo FJC-B9.
67771<- CCUG <- Toshinari Maruo, FJC-B9

doi: 10.13145/bacdive3073.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Adlercreutzia
  • species: Adlercreutzia equolifaciens
  • full scientific name: Adlercreutzia equolifaciens Maruo et al. 2008

@ref: 8024

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Eggerthellaceae

genus: Adlercreutzia

species: Adlercreutzia equolifaciens subsp. equolifaciens

full scientific name: Adlercreutzia equolifaciens subsp. equolifaciens (Maruo et al. 2008) Nouioui et al. 2018

strain designation: FJC-B9

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32379positive2.1 µm0.65 µmovoid-shapedno
67771no
67771positive
69480positive100

colony morphology

  • @ref: 60388
  • incubation period: 2-3 days

pigmentation

  • @ref: 32379
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8024PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
8024WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8024positivegrowth37mesophilic
60388positivegrowth37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8024anaerobe
32379anaerobe
60388anaerobe
67771anaerobe
69480anaerobe99.078

spore formation

@refspore formationconfidence
32379no
67771no
69481no100
69480no99.987

observation

@refobservation
67770quinones: DMMK-6
67771quinones: DMMK-6(70-96%), MMK-6(1-29%)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3237929016arginine+carbon source
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8024-+----------+----------------
8024-+-------------------+-------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
8024human faecesJapanJPNAsia
60388Human feces,25-yr-old healthy womanJapanJPNAsia2006-06-01
67770Human feces
67771From human fecesJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4556.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15800;96_2274;97_2756;98_3424;99_4556&stattab=map
  • Last taxonomy: Adlercreutzia equolifaciens subclade
  • 16S sequence: AB649147
  • Sequence Identity:
  • Total samples: 103294
  • soil counts: 562
  • aquatic counts: 2542
  • animal counts: 99975
  • plant counts: 215

Safety information

risk assessment

  • @ref: 8024
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Adlercreutzia equolifaciens gene for 16S ribosomal RNA, partial sequenceAB6491471469ena446660
8024Adlercreutzia equolifaciens gene for 16S ribosomal RNA, partial sequence, strain: FJC-B9AB3066611469ena446660

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Adlercreutzia equolifaciens DSM 19450GCA_000478885completencbi1384484
66792Adlercreutzia equolifaciens KCTC 15235GCA_003428235contigncbi446660
66792Adlercreutzia equolifaciens DSM 194501384484.3completepatric1384484
66792Adlercreutzia equolifaciens strain KCTC 15235446660.3wgspatric446660
66792Adlercreutzia equolifaciens DSM 194502597489914completeimg1384484

GC content

@refGC-contentmethod
802464.1
3237964
6777064high performance liquid chromatography (HPLC)
6777164.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.829yes
flagellatedno98.49yes
gram-positiveyes91.296yes
anaerobicyes98.94yes
aerobicno96.037no
halophileno86.986no
spore-formingno93.116no
glucose-utilyes65.38no
thermophileno99.191no
glucose-fermentno59.512no

External links

@ref: 8024

culture collection no.: DSM 19450, CCUG 54925, JCM 14793, KCTC 15235

straininfo link

  • @ref: 72592
  • straininfo: 406541

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18450717Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella.Maruo T, Sakamoto M, Ito C, Toda T, Benno YInt J Syst Evol Microbiol10.1099/ijs.0.65404-02008Bacterial Typing Techniques, Cytophagaceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Equol, Feces/*microbiology, Genes, rRNA, Genotype, Humans, Isoflavones/*biosynthesis/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Genetics24051320Complete Genome Sequence of the Equol-Producing Bacterium Adlercreutzia equolifaciens DSM 19450T.Toh H, Oshima K, Suzuki T, Hattori M, Morita HGenome Announc10.1128/genomeA.00742-132013
Metabolism25747993Biotransformation of (-)-epigallocatechin and (-)-gallocatechin by intestinal bacteria involved in isoflavone metabolism.Takagaki A, Nanjo FBiol Pharm Bull10.1248/bpb.b14-006462015Actinobacteria/*metabolism, Biotransformation, Catechin/*analogs & derivatives/metabolism, Intestines/microbiology, Isoflavones/metabolism
Phylogeny29583112Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut.Beltran D, Romo-Vaquero M, Espin JC, Tomas-Barberan FA, Selma MVInt J Syst Evol Microbiol10.1099/ijsem.0.0027352018Actinobacteria/*classification/genetics/isolation & purification, Adult, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/chemistry, Feces/microbiology, Gastrointestinal Tract/*microbiology, Glycolipids/chemistry, Humans, Male, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryPathogenicity
Metabolism31052328Transcriptional Regulation of the Equol Biosynthesis Gene Cluster in Adlercreutzia equolifaciens DSM19450(T).Florez AB, Vazquez L, Rodriguez J, Redruello B, Mayo BNutrients10.3390/nu110509932019Actinobacteria/*metabolism, Equol/*biosynthesis/*genetics, Gene Expression Regulation, Bacterial, Genes, Bacterial, Isoflavones/genetics/metabolism, *Multigene Family, *Regulatory Elements, Transcriptional
Metabolism32586036Metabolism of Soy Isoflavones by Intestinal Bacteria: Genome Analysis of an Adlercreutzia Equolifaciens Strain That Does Not Produce Equol.Vazquez L, Florez AB, Redruello B, Mayo BBiomolecules10.3390/biom100609502020Actinobacteria/classification/*genetics/*metabolism, Equol/biosynthesis, Female, Humans, Intestines/*microbiology, Isoflavones/analysis/genetics/*metabolismPathogenicity
Metabolism34173644Heterologous expression of equol biosynthesis genes from Adlercreutzia equolifaciens.Vazquez L, Florez AB, Rodriguez J, Mayo BFEMS Microbiol Lett10.1093/femsle/fnab0822021Actinobacteria/*genetics, Bacterial Proteins/*genetics/metabolism, Cloning, Molecular, Equol/*biosynthesis, Escherichia coli/genetics/*metabolism, *Gene Expression, Isoflavones/metabolismEnzymology
Phylogeny34870581Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces.Sakamoto M, Ikeyama N, Yuki M, Murakami T, Mori H, Iino T, Ohkuma MInt J Syst Evol Microbiol10.1099/ijsem.0.0051212021Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Equol/biosynthesis, Feces/microbiology, Humans, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8024Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19450)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19450
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32379Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604128606
60388Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54925)https://www.ccug.se/strain?id=54925
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72592Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406541.1StrainInfo: A central database for resolving microbial strain identifiers