Strain identifier

BacDive ID: 3062

Type strain: Yes

Species: Olsenella umbonata

Strain Designation: lac31

Culture col. no.: DSM 22620, CCUG 58604, JCM 16156, KCTC 15140

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General

@ref: 16369

BacDive-ID: 3062

DSM-Number: 22620

keywords: obligate anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Olsenella umbonata lac31 is an obligate anaerobe, mesophilic bacterium that was isolated from jejunal mucosa of a domestic pig.

strain history: <- M. Kraatz, Faculty Vet. Med., Free Univ. Berlin, Germany; lac31

doi: 10.13145/bacdive3062.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Coriobacteriia
  • order: Coriobacteriales
  • family: Atopobiaceae
  • genus: Olsenella
  • species: Olsenella umbonata
  • full scientific name: Olsenella umbonata Kraatz et al. 2011

@ref: 16369

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Atopobiaceae

genus: Olsenella

species: Olsenella umbonata

full scientific name: Olsenella umbonata Kraatz et al. 2011 emend. Nouioui et al. 2018

strain designation: lac31

type strain: yes

Morphology

colony morphology

  • @ref: 61724
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 16369
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104), pH 7.0, obligately anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104.pdf

culture temp

@refgrowthtypetemperaturerange
16369positivegrowth37mesophilic
61724positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16369obligate anaerobe
61724anaerobe

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
16369-+---+----------+------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16369jejunal mucosa of a domestic pigBerlin-Dahlem, Institute of Animal NutritionGermanyDEUEurope
61724Pig jejunal mucosa,healthy 62-day old animalBerlinGermanyDEUEurope2006-12-25

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Small intestine

Safety information

risk assessment

  • @ref: 16369
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16369
  • description: Olsenella umbonata partial 16S rRNA gene, type strain lac31T
  • accession: FN178463
  • length: 1428
  • database: ena
  • NCBI tax ID: 604330

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Olsenella umbonata DSM 22620GCA_900105025chromosomencbi604330
66792Olsenella umbonata WB01_CNA04GCA_009695845contigncbi604330
66792Olsenella umbonata KHGC19GCA_900111255scaffoldncbi604330
66792Olsenella umbonata 105184GCA_012844235contigncbi604330
66792Olsenella umbonata WCP15GCA_900108495contigncbi604330
66792Olsenella umbonata RUG12527GCA_902780015scaffoldncbi604330
66792Olsenella umbonata RUG11912GCA_902773885scaffoldncbi604330
66792Olsenella umbonata RUG13210GCA_902786795scaffoldncbi604330
66792Olsenella umbonata strain DSM 22620604330.5completepatric604330
66792Olsenella umbonata strain KHGC19604330.6wgspatric604330
66792Olsenella umbonata strain WB01_CNA04604330.56wgspatric604330
66792Olsenella umbonata strain WCP15604330.7wgspatric604330
66792Olsenella umbonata DSM 226202636416177permanentimg604330
66792Olsenella umbonata WCP152657244903permanentimg604330
66792Olsenella umbonata KHGC192660238784permanentimg604330

External links

@ref: 16369

culture collection no.: DSM 22620, CCUG 58604, JCM 16156, KCTC 15140

straininfo link

@refpassport
20218http://www.straininfo.net/strains/865269
20218http://www.straininfo.net/strains/865268
20218http://www.straininfo.net/strains/865270

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16369Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22620)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22620
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
61724Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58604)https://www.ccug.se/strain?id=58604
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)