Strain identifier
BacDive ID: 3057
Type strain: 
Species: Eggerthella sp.
Strain history: <- S. Reading, Inst. Food Res. (BBSRC), Reading, United Kingdom; MuC3 <- S. Reading {1997}
NCBI tax ID(s): 1929886 (species)
version 8.1 (current version)
General
@ref: 4479
BacDive-ID: 3057
DSM-Number: 11767
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Eggerthella sp. DSM 11767 is an anaerobe, mesophilic bacterium that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 1929886
- Matching level: species
strain history
- @ref: 4479
- history: <- S. Reading, Inst. Food Res. (BBSRC), Reading, United Kingdom; MuC3 <- S. Reading {1997}
doi: 10.13145/bacdive3057.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Coriobacteriia
- order: Eggerthellales
- family: Eggerthellaceae
- genus: Eggerthella
- species: Eggerthella sp.
- full scientific name: Eggerthella Wade et al. 1999
synonyms
- @ref: 20215
- synonym: Eggerthella
@ref: 4479
domain: Bacteria
phylum: Actinobacteria
class: Coriobacteriia
order: Coriobacteriales
family: Eggerthellaceae
genus: Eggerthella
species: Eggerthella sp.
full scientific name: Eggerthella sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 4479
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 4479
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4479
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4479
- sample type: human faeces
- geographic location: England, Reading
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_161.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15800;96_120;97_127;98_142;99_161&stattab=map
- Last taxonomy: Eggerthella lenta subclade
- 16S sequence: MN326809
- Sequence Identity:
- Total samples: 42736
- soil counts: 49
- aquatic counts: 1212
- animal counts: 41431
- plant counts: 44
Sequence information
16S sequences
- @ref: 4479
- description: Eggerthella lenta strain DSM 11767 16S ribosomal RNA gene, partial sequence
- accession: MN326809
- length: 1376
- database: ena
- NCBI tax ID: 84112
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Eggerthella lenta DSM 11767 | GCA_003340045 | contig | ncbi | 84112 |
| 66792 | Eggerthella lenta strain DSM 11767 | 84112.16 | wgs | patric | 84112 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.216 | no |
| flagellated | no | 98.103 | no |
| gram-positive | yes | 84.956 | no |
| anaerobic | yes | 98.28 | yes |
| halophile | no | 90.891 | no |
| spore-forming | no | 87.633 | no |
| thermophile | no | 99.736 | yes |
| glucose-util | yes | 66.746 | no |
| aerobic | no | 95.625 | yes |
| glucose-ferment | no | 59.632 | no |
External links
@ref: 4479
culture collection no.: DSM 11767, Muc MuC3, Muc 3
straininfo link
- @ref: 72577
- straininfo: 397439
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4479 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11767) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11767 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72577 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397439.1 | StrainInfo: A central database for resolving microbial strain identifiers |