Strain identifier

BacDive ID: 3051

Type strain: Yes

Species: Coriobacterium glomerans

Strain Designation: PW2

Strain history: DSM 20642 <-- F. Haas PW2.

NCBI tax ID(s): 700015 (strain), 33871 (species)

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General

@ref: 8862

BacDive-ID: 3051

DSM-Number: 20642

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Coriobacterium glomerans PW2 is an anaerobe, mesophilic bacterium that was isolated from intestinal tract of red soldier bug .

NCBI tax id

NCBI tax idMatching level
33871species
700015strain

strain history

@refhistory
8862<- F. Haas, PW2
67770DSM 20642 <-- F. Haas PW2.

doi: 10.13145/bacdive3051.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Coriobacteriales
  • family: Coriobacteriaceae
  • genus: Coriobacterium
  • species: Coriobacterium glomerans
  • full scientific name: Coriobacterium glomerans Haas and König 1988

@ref: 8862

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Coriobacteriaceae

genus: Coriobacterium

species: Coriobacterium glomerans

full scientific name: Coriobacterium glomerans Haas and König 1988

strain designation: PW2

type strain: yes

Morphology

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_20642_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 8862
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
8862positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8862
  • oxygen tolerance: anaerobe

murein

  • @ref: 8862
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8862------+---++-----+--+/-+-++/-++-+

Isolation, sampling and environmental information

isolation

@refsample typehost species
8862intestinal tract of red soldier bug (Pyrrhocoris apterus L.)Pyrrhocoris apterus
67770Intestinal tract of red soldier bug

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_782.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_147;96_473;97_541;98_624;99_782&stattab=map
  • Last taxonomy: Coriobacterium glomerans subclade
  • 16S sequence: X79048
  • Sequence Identity:
  • Total samples: 3892
  • soil counts: 26
  • aquatic counts: 44
  • animal counts: 3817
  • plant counts: 5

Safety information

risk assessment

  • @ref: 8862
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8862Coriobacterium glomerans 16S rDNA geneX790481435ena700015
67770Coriobacterium glomerans JCM 10262 gene for 16S ribosomal RNA, partial sequenceLC4807891445ena33871

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Coriobacterium glomerans PW2GCA_000195315completencbi700015
66792Coriobacterium glomerans PW2700015.3completepatric700015
66792Coriobacterium glomerans PW2, DSM 206422503538010completeimg700015

GC content

@refGC-contentmethod
886261.0
6777060thermal denaturation, midpoint method (Tm)
6777060.4genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.342no
flagellatedno98.207no
gram-positiveyes91.498no
anaerobicyes98.21no
aerobicno98.497yes
halophileno76.672no
spore-formingno93.616no
thermophileno86.582no
glucose-utilyes90.467no
glucose-fermentyes77.649no

External links

@ref: 8862

culture collection no.: DSM 20642, ATCC 49209, JCM 10262, CCUG 39905

straininfo link

  • @ref: 72571
  • straininfo: 42352

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8862Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20642)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20642
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72571Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42352.1StrainInfo: A central database for resolving microbial strain identifiers