Strain identifier

BacDive ID: 3043

Type strain: Yes

Species: Fannyhessea vaginae

Strain history: CIP <- 2000, CCUG <- I. Mattsby, Göteborg, Sweden

NCBI tax ID(s): 525256 (strain), 82135 (species)

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General

@ref: 6041

BacDive-ID: 3043

DSM-Number: 15829

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Fannyhessea vaginae DSM 15829 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human vaginal flora, healthy person.

NCBI tax id

NCBI tax idMatching level
525256strain
82135species

strain history

@refhistory
6041<- CCUG <- I. Mattsby
67771<- CCUG <- I Mattsby
123775CIP <- 2000, CCUG <- I. Mattsby, Göteborg, Sweden

doi: 10.13145/bacdive3043.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Coriobacteriales
  • family: Atopobiaceae
  • genus: Fannyhessea
  • species: Fannyhessea vaginae
  • full scientific name: Fannyhessea vaginae (Rodriguez Jovita et al. 1999) Nouioui et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Atopobium vaginae

@ref: 6041

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Atopobiaceae

genus: Fannyhessea

species: Fannyhessea vaginae

full scientific name: Fannyhessea vaginae (Rodriguez Jovita et al. 1999) Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotility
23097positive0.6-0.9 µmcoccus-shapedno
67771coccus-shaped
67771positive
123775positiverod-shapedno

colony morphology

  • @ref: 123775

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6041CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
6041CHOCOLATE AGAR (DSMZ Medium 429b)yeshttps://mediadive.dsmz.de/medium/429bName: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base
23097Columbia CNA agar (Difco)yessupplemented with 5% horse blood
36590MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
6041PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
123775CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
123775CIP Medium 6-Boites-Bioradyeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6-Boites-Biorad

culture temp

@refgrowthtypetemperaturerange
6041positivegrowth37mesophilic
36590positivegrowth37mesophilic
54577positivegrowth37mesophilic
67771positivegrowth37mesophilic
123775positivegrowth30-37mesophilic
123775nogrowth10psychrophilic
123775nogrowth25mesophilic
123775nogrowth41thermophilic
123775nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6041anaerobe
23097facultative anaerobe
54577anaerobe
67771anaerobe
123775anaerobe

halophily

  • @ref: 123775
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2309737684mannose-builds acid from
2309716634raffinose-builds acid from
230974853esculin-hydrolysis
230975291gelatin-hydrolysis
2309717632nitrate-reduction
1237754853esculin-hydrolysis
123775606565hippurate-hydrolysis
12377517632nitrate-reduction
12377516301nitrite-reduction
6838016199urea-hydrolysis
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
2309735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6838035581indole-
12377515688acetoin-

enzymes

@refvalueactivityec
230976-phospho-beta-galactosidase-3.2.1.85
23097acid phosphatase+3.1.3.2
23097alanine arylamidase-3.4.11.2
23097alpha-arabinosidase-3.2.1.55
23097alpha-chymotrypsin-3.4.21.1
23097alpha-fucosidase-3.2.1.51
23097alpha-galactosidase-3.2.1.22
23097alpha-glucosidase-3.2.1.20
23097alpha-mannosidase-3.2.1.24
23097arginine arylamidase+
23097arginine dihydrolase+3.5.3.6
23097beta-galactosidase-3.2.1.23
23097beta-glucosidase-3.2.1.21
23097beta-glucuronidase-3.2.1.31
23097cystine arylamidase-3.4.11.3
23097esterase (C 4)-
23097esterase lipase (C 8)-
23097glutamate decarboxylase-4.1.1.15
23097glutamyl-glutamate arylamidase-
23097glycin arylamidase+
23097histidine arylamidase+
23097leucine arylamidase+3.4.11.1
23097lipase (C 14)-
23097N-acetyl-beta-glucosaminidase-3.2.1.52
23097phenylalanine arylamidase+
23097proline-arylamidase+3.4.11.5
23097pyroglutamic acid arylamidase-
23097serine arylamidase+
23097trypsin-3.4.21.4
23097tyrosine arylamidase-
23097urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68380glutamyl-glutamate arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380urease-3.5.1.5
123775oxidase-
123775beta-galactosidase-3.2.1.23
123775alcohol dehydrogenase-1.1.1.1
123775catalase+1.11.1.6
123775gamma-glutamyltransferase-2.3.2.2
123775lysine decarboxylase-4.1.1.18
123775ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54577--+--+----++--------
123775--++-+----++---+----

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
6041-+--------+------+++/-+/-+-+-++-+/-
6041----------+/-------++--+/--------
6041-+/----------------+++/-+/-+-+/--+/-+/---
6041-+--------+------++--+-------
54577-+--------------++++++-++++-+
6041-+--------+------+++++-++++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling dateisolation date
6041human vaginal flora, healthy personGöteborgSwedenSWEEurope57.708911.9746
54577Human vaginal flora,healthy personGöteborgSwedenSWEEurope1998-01-01
67771From human vaginal flora, healthy personGoteborgSwedenSWEEurope
123775Human, Vaginal floraGöteborgSwedenSWEEurope1998

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Urogenital tract#Vagina

taxonmaps

  • @ref: 69479
  • File name: preview.99_5327.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_150;96_2578;97_3159;98_3970;99_5327&stattab=map
  • Last taxonomy: Fannyhessea vaginae
  • 16S sequence: Y17195
  • Sequence Identity:
  • Total samples: 48424
  • soil counts: 1353
  • aquatic counts: 1960
  • animal counts: 44584
  • plant counts: 527

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
60412Risk group (German classification)
1237751Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Atopobium vaginae DSM 15829 16S ribosomal RNA gene, partial sequenceHM0075631331ena525256
6041Atopobium sp. strain CCUG 38953 16S ribosomal RNAY171951351ena525256
67771Atopobium vaginae DSM 15829 contig00003, whole genome shotgun sequenceACGK010000035211ena525256

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fannyhessea vaginae DSM 15829GCA_000159235contigncbi525256
66792Fannyhessea vaginae DSM 15829GCA_000178335scaffoldncbi525256
66792Atopobium vaginae DSM 15829525256.4wgspatric525256
66792Atopobium vaginae DSM 15829 (Prj:53885)525256.5wgspatric525256
66792Fannyhessea vaginae strain FDAARGOS_93482135.84completepatric82135
66792Fannyhessea vaginae DSM 15829648276620completeimg525256
66792Fannyhessea vaginae DSM 158292562617091draftimg525256

GC content

@refGC-contentmethod
604144
6777144.0thermal denaturation, midpoint method (Tm)

External links

@ref: 6041

culture collection no.: DSM 15829, ATCC BAA 55, CCUG 38953, CIP 106431, KCTC 15240

straininfo link

  • @ref: 72563
  • straininfo: 44274

literature

  • topic: Phylogeny
  • Pubmed-ID: 10555338
  • title: Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov.
  • authors: Rodriguez Jovita M, Collins MD, Sjoden B, Falsen E
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-4-1573
  • year: 1999
  • mesh: Actinobacteria/*classification/*genetics/isolation & purification/physiology, Bacterial Typing Techniques, Female, Genes, rRNA, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vagina/*microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6041Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15829)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15829
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23097Mar Rodriguez Jovita,Matthew D. Collins,Berit Sjödén,Enevold Falsen10.1099/00207713-49-4-1573Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov.IJSEM 49: 1573-1576 199910555338
36590Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18561
54577Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38953)https://www.ccug.se/strain?id=38953
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72563Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44274.1StrainInfo: A central database for resolving microbial strain identifiers
123775Curators of the CIPCollection of Institut Pasteur (CIP 106431)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106431