Strain identifier
BacDive ID: 3031
Type strain:
Species: Roseateles asaccharophilus
Strain Designation: KIN192
Strain history: <- CECT <- J. Lalucat, Universitat de les Illes Balears, Microbiologia, Departament de Biologia, Palma de Mallorca, Spain <- CCUG <- J. Pinhassi, Dept. Pure and Applied Nat. Scs., Univ. Kalmar, Sweden
NCBI tax ID(s): 582607 (species)
General
@ref: 17840
BacDive-ID: 3031
DSM-Number: 25082
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Roseateles asaccharophilus KIN192 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater lake.
NCBI tax id
- NCBI tax id: 582607
- Matching level: species
strain history
- @ref: 17840
- history: <- CECT <- J. Lalucat, Universitat de les Illes Balears, Microbiologia, Departament de Biologia, Palma de Mallorca, Spain <- CCUG <- J. Pinhassi, Dept. Pure and Applied Nat. Scs., Univ. Kalmar, Sweden
doi: 10.13145/bacdive3031.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Roseateles
- species: Roseateles asaccharophilus
- full scientific name: Roseateles asaccharophilus (Gomila et al. 2010) Liu et al. 2023
synonyms
- @ref: 20215
- synonym: Kinneretia asaccharophila
@ref: 17840
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Kinneretia
species: Kinneretia asaccharophila
full scientific name: Kinneretia asaccharophila Gomila et al. 2010
strain designation: KIN192
type strain: yes
Morphology
cell morphology
- @ref: 29355
- gram stain: negative
- cell length: 2 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 59805
- incubation period: 1 day
pigmentation
- @ref: 29355
- production: yes
Culture and growth conditions
culture medium
- @ref: 17840
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17840 | positive | growth | 28 | mesophilic |
29355 | positive | growth | 20-37 | |
29355 | positive | optimum | 28.5 | mesophilic |
59805 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 59805
- oxygen tolerance: aerobe
halophily
- @ref: 29355
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 0.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29355 | 62064 | 2,3-butanediol | + | carbon source |
29355 | 30089 | acetate | + | carbon source |
29355 | 17128 | adipate | + | carbon source |
29355 | 21217 | L-alaninamide | + | carbon source |
29355 | 16449 | alanine | + | carbon source |
29355 | 40585 | alpha-cyclodextrin | + | carbon source |
29355 | 28644 | 2-oxopentanoate | + | carbon source |
29355 | 22653 | asparagine | + | carbon source |
29355 | 23652 | dextrin | + | carbon source |
29355 | 24265 | gluconate | + | carbon source |
29355 | 29987 | glutamate | + | carbon source |
29355 | 17596 | inosine | + | carbon source |
29355 | 24996 | lactate | + | carbon source |
29355 | 18401 | phenylacetate | + | carbon source |
29355 | 28044 | phenylalanine | + | carbon source |
29355 | 26271 | proline | + | carbon source |
29355 | 51850 | methyl pyruvate | + | carbon source |
29355 | 17822 | serine | + | carbon source |
29355 | 26986 | threonine | + | carbon source |
29355 | 17748 | thymidine | + | carbon source |
29355 | 53423 | tween 40 | + | carbon source |
29355 | 53426 | tween 80 | + | carbon source |
29355 | 16704 | uridine | + | carbon source |
29355 | 27248 | urocanic acid | + | carbon source |
29355 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29355 | alkaline phosphatase | + | 3.1.3.1 |
29355 | gelatinase | + | |
29355 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
17840 | freshwater lake | Lake Kinneret | Israel | ISR | Asia | |
59805 | Freshwater | Lake Kinneret | Israel | ISR | Asia | 2000-09-11 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Environmental | #Aquatic | #Lake (large) |
Safety information
risk assessment
- @ref: 17840
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17840
- description: Kinneretia asaccharophila strain KIN192 16S ribosomal RNA gene, partial sequence
- accession: AY136099
- length: 1386
- database: ena
- NCBI tax ID: 582607
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Kinneretia asaccharophila DSM 25082 | GCA_004362405 | scaffold | ncbi | 582607 |
66792 | Kinneretia asaccharophila strain DSM 25082 | 582607.3 | wgs | patric | 582607 |
66792 | Kinneretia asaccharophila DSM 25082 | 2770939493 | draft | img | 582607 |
GC content
- @ref: 17840
- GC-content: 69.3
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 91.612 | no |
flagellated | yes | 92.406 | no |
gram-positive | no | 98.623 | yes |
anaerobic | no | 98.862 | no |
aerobic | yes | 95.468 | yes |
halophile | no | 96.124 | yes |
spore-forming | no | 93.803 | no |
glucose-util | yes | 70.646 | no |
thermophile | no | 97.004 | yes |
glucose-ferment | no | 86.637 | no |
External links
@ref: 17840
culture collection no.: DSM 25082, CCUG 53117, CECT 7319
straininfo link
- @ref: 72551
- straininfo: 369430
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19661516 | Kinneretia asaccharophila gen. nov., sp. nov., isolated from a freshwater lake, a member of the Rubrivivax branch of the family Comamonadaceae. | Gomila M, Pinhassi J, Falsen E, Moore ERB, Lalucat J | Int J Syst Evol Microbiol | 10.1099/ijs.0.011478-0 | 2009 | Bacterial Typing Techniques, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, DNA Gyrase/genetics, DNA, Ribosomal Spacer/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Israel, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
Phylogeny | 31081749 | Aquincola rivuli sp. nov., isolated from a freshwater stream. | Sheu SY, Hsieh TY, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003429 | 2019 | Bacterial Typing Techniques, Base Composition, Burkholderiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
17840 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25082) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25082 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
29355 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25767 | 28776041 | ||
59805 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 53117) | https://www.ccug.se/strain?id=53117 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
72551 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID369430.1 | StrainInfo: A central database for resolving microbial strain identifiers |