Archive BacDiveID:10.13145/bacdive3013.20241212.9.2

Strain identifier

BacDive ID: 3013

Type strain:

Species: Variovorax sp.

Strain Designation: d5I

Strain history: <- N. Layh; d5I

NCBI tax ID(s): 239725 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4351

BacDive-ID: 3013

DSM-Number: 11402

keywords: Bacteria, mesophilic

description: Variovorax sp. d5I is a mesophilic bacterium that was isolated from soil.

NCBI tax id

NCBI tax id: 239725
Matching level: species

strain history

@ref: 4351
history: <- N. Layh; d5I

doi: 10.13145/bacdive3013.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Variovorax
species: Variovorax sp.
full scientific name: Variovorax Willems et al. 1991

@ref: 4351

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Variovorax

species: Variovorax sp.

full scientific name: Variovorax sp.

strain designation: d5I

type strain: no

Culture and growth conditions

culture medium

@ref: 4351
name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
growth: yes
link: https://mediadive.dsmz.de/medium/220
composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@ref: 4351
growth: positive
type: growth
temperature: 28

Physiology and metabolism

compound production

@ref	compound
4351	nitrilase
4351	arylamide amidase

Isolation, sampling and environmental information

isolation

@ref: 4351
sample type: soil
geographic location: Stuttgart
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Soil

External links

@ref: 4351

culture collection no.: DSM 11402

straininfo link

@ref: 72535
straininfo: 49105

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Enzymology	15162394	Searching for nitrile hydratase using the Consensus-Degenerate Hybrid Oligonucleotide Primers strategy.	Lourenco PM, Almeida T, Mendonca D, Simoes F, Novo C	J Basic Microbiol	10.1002/jobm.200310340	2004	Agrobacterium tumefaciens/enzymology/genetics, Comamonadaceae/enzymology/genetics, Consensus Sequence, DNA Primers, DNA, Bacterial/chemistry/isolation & purification, Genes, Bacterial, Hydro-Lyases/genetics/isolation & purification, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Protein Subunits, Rhodococcus/enzymology/genetics/growth & development, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology	Phylogeny
Metabolism	17125153	Demonstrating formation of potentially persistent transformation products from the herbicides bromoxynil and ioxynil using liquid chromatography-tandem mass spectrometry (LC-MS/MS).	Nielsen MK, Holtze MS, Svensmark B, Juhler RK	Pest Manag Sci	10.1002/ps.1311	2007	Adsorption, Biodegradation, Environmental, Chromatography, Liquid/methods, Dose-Response Relationship, Drug, Herbicides/chemistry/metabolism, Iodobenzenes/chemistry, Kinetics, Mass Spectrometry/methods, Nitriles/chemistry, Proteobacteria/metabolism, Quantitative Structure-Activity Relationship, Soil Microbiology, Species Specificity, Water Supply	Enzymology

Reference

@id	authors	catalogue	doi/url	title
4351	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11402)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-11402
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
72535	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID49105.1	StrainInfo: A central database for resolving microbial strain identifiers