Strain identifier

BacDive ID: 30

Type strain: Yes

Species: Acidiphilium acidophilum

Strain history: CIP <- 1995, DSM <- R. Guay <- (D.G. Lundgren)

NCBI tax ID(s): 1307921 (strain), 76588 (species)

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General

@ref: 363

BacDive-ID: 30

DSM-Number: 700

keywords: 16S sequence, Bacteria, mesophilic

description: Acidiphilium acidophilum DSM 700 is a mesophilic bacterium that was isolated from culture of Thiobacillus ferrooxidans, strain TM .

NCBI tax id

NCBI tax idMatching level
76588species
1307921strain

strain history

@refhistory
363<- R. Guay, Université Laval, Québec, Canada <- R. Guay and M. Silver {1975}
116017CIP <- 1995, DSM <- R. Guay <- (D.G. Lundgren)

doi: 10.13145/bacdive30.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acidiphilium
  • species: Acidiphilium acidophilum
  • full scientific name: Acidiphilium acidophilum (Harrison 1983 ex Guay and Silver 1975) Hiraishi et al. 1998

  • synonyms

    • @ref: 20215
    • synonym: Thiobacillus acidophilus

@ref: 363

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acidiphilium

species: Acidiphilium acidophilum

full scientific name: Acidiphilium acidophilum (Harrison 1983) Hiraishi et al. 1998

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
363ACIDIPHILIUM ACIDOPHILUM MEDIUM (DSMZ Medium 108)yeshttps://mediadive.dsmz.de/medium/108Name: ACIDIPHILIUM ACIDOPHILUM MEDIUM (DSMZ Medium 108) Composition: Agar 15.0 g/l D-Glucose 10.0 g/l (NH4)2SO4 3.0 g/l MgSO4 x 7 H2O 1.0 g/l KH2PO4 0.5 g/l KCl 0.1 g/l Ca(NO3)2 x 4 H2O 0.018 g/l FeSO4 x 7 H2O 1e-05 g/l Distilled water
41191MEDIUM 125 - for Thiobacillus acidophilusyesDistilled water make up to (1000.000 ml);Potassium chloride (0.100 mg);Iron (II) sulphate heptahydrate (0.010 mg);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Glucose (10.000 g);Ammonium sulphate (3.000 g);Potassium di-hydrogen phosphate (0.5
116017CIP Medium 125yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=125

culture temp

@refgrowthtypetemperaturerange
363positivegrowth30mesophilic
41191positivegrowth26mesophilic

Physiology and metabolism

compound production

  • @ref: 363
  • compound: threonine deaminase

Isolation, sampling and environmental information

isolation

@refsample typehost speciesisolation date
363derived from culture of Thiobacillus ferrooxidans, strain TM (D.G. Lundgren, Syracuse University, NY, USA)Thiobacillus ferrooxidans
1160171975

isolation source categories

  • Cat1: #Host
  • Cat2: #Microbial
  • Cat3: #Bacteria

taxonmaps

  • @ref: 69479
  • File name: preview.99_51188.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_958;97_1117;98_1333;99_51188&stattab=map
  • Last taxonomy: Acidiphilium acidophilum
  • 16S sequence: D86511
  • Sequence Identity:
  • Total samples: 376
  • soil counts: 110
  • aquatic counts: 221
  • animal counts: 37
  • plant counts: 8

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
3631Risk group (German classification)
1160171Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Thiobacillus acidophilus 16S rRNA sequenceM79399656ena76588
20218Thiobacillus acidophilus 16S rRNA sequenceM79400340ena76588
363Acidiphilium acidophilum gene for 16S rRNAD865111419ena76588

GC content

  • @ref: 363
  • GC-content: 62.9-63.2

External links

@ref: 363

culture collection no.: DSM 700, ATCC 27807, CIP 104483

straininfo link

  • @ref: 69714
  • straininfo: 39187

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9828441Phylogeny and photosynthetic features of Thiobacillus acidophilus and related acidophilic bacteria: its transfer to the genus Acidiphilium as Acidiphilium acidophilum comb. nov.Hiraishi A, Nagashima KV, Matsuura K, Shimada K, Takaichi S, Wakao N, Katayama YInt J Syst Bacteriol10.1099/00207713-48-4-13891998Bacteriochlorophylls/analysis, Base Composition, Carotenoids/analysis, Chromatography, High Pressure Liquid, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Gram-Negative Chemolithotrophic Bacteria/*classification/genetics/isolation & purification/metabolism, Light-Harvesting Protein Complexes, Molecular Sequence Data, Nucleic Acid Hybridization, *Photosynthesis, Photosynthetic Reaction Center Complex Proteins/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thiobacillus/*classification/genetics/isolation & purification/metabolism, Waste Disposal, Fluid, Water MicrobiologyEnzymology
Metabolism12855721The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp.Rohwerder T, Sand WMicrobiology (Reading)10.1099/mic.0.26212-02003Acetobacteraceae/*enzymology, *Dioxygenases, Gammaproteobacteria/*enzymology, Glutathione/chemistry/metabolism, Glutathione Disulfide/chemistry/metabolism, Hydrogen Sulfide/chemistry/metabolism, Models, Chemical, Oxidation-Reduction, Oxygenases/*metabolism, Substrate Specificity, Sulfides/chemistry/*metabolism, Sulfur/chemistryEnzymology
Enzymology15676194Detection of Acidithiobacillus ferrooxidans in acid mine drainage environments using fluorescent in situ hybridization (FISH).Mahmoud KK, Leduc LG, Ferroni GDJ Microbiol Methods10.1016/j.mimet.2004.10.0222005Acidithiobacillus/genetics/*isolation & purification, DNA, Bacterial/genetics, Image Processing, Computer-Assisted, In Situ Hybridization, Fluorescence/*methods, *Industrial Waste, Microscopy, Fluorescence, *Mining, *Water Pollutants, ChemicalPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
363Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 700)https://www.dsmz.de/collection/catalogue/details/culture/DSM-700
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41191Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16396
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69714Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39187.1StrainInfo: A central database for resolving microbial strain identifiers
116017Curators of the CIPCollection of Institut Pasteur (CIP 104483)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104483