Strain identifier

BacDive ID: 299

Type strain: No

Species: Achromobacter xylosoxidans

Strain Designation: T7

Strain history: <- F. Streichsbier (Pseudomonas sp. T7)

NCBI tax ID(s): 85698 (species)

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General

@ref: 4511

BacDive-ID: 299

DSM-Number: 11852

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Achromobacter xylosoxidans T7 is a mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 85698
  • Matching level: species

strain history

  • @ref: 4511
  • history: <- F. Streichsbier (Pseudomonas sp. T7)

doi: 10.13145/bacdive299.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter xylosoxidans
  • full scientific name: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981

  • synonyms

    @refsynonym
    20215Alcaligenes xylosoxydans
    20215Alcaligenes xylosoxidans
    20215Alcaligenes denitrificans subsp. xylosoxydans
    20215Achromobacter xylosoxidans

@ref: 4511

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter xylosoxidans

full scientific name: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981 emend. Yabuuchi et al. 1998

strain designation: T7

type strain: no

Morphology

cell morphology

  • @ref: 125438
  • gram stain: negative
  • confidence: 96.206

Culture and growth conditions

culture medium

  • @ref: 4511
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 4511
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4511+-------+/-+/-----+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 4511
  • sample type: soil
  • country: Austria
  • origin.country: AUT
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 4511
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Achromobacter pestifer strain FDAARGOS_790
  • accession: 1353889.4
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1353889

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.206no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.213no
125438spore-formingspore-formingAbility to form endo- or exosporesno88.17no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.333no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98yes
125438motile2+flagellatedAbility to perform flagellated movementyes85.841no

External links

@ref: 4511

culture collection no.: DSM 11852

straininfo link

  • @ref: 69981
  • straininfo: 49190

phages

@refnamestrain numberlink
124042Achromobacter phage JWDeltaDSM 11852https://phagedive.dsmz.de/strain/811
124042Achromobacter phage JWAlpha (Achromobacter virus JWAlpha)DSM 11852https://phagedive.dsmz.de/strain/812

Reference

@idauthorscataloguedoi/urltitle
4511Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11852)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11852
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69981Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49190.1StrainInfo: A central database for resolving microbial strain identifiers
124042Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardàhttps://phagedive.dsmz.de/PhageDive
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets