Strain identifier

BacDive ID: 2984

Type strain: Yes

Species: Polaromonas jejuensis

Strain Designation: JS12-13

Strain history: <- S.-W. Kwon, KACC; JS12-13 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, Korea

NCBI tax ID(s): 457502 (species)

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General

@ref: 8066

BacDive-ID: 2984

DSM-Number: 19351

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Polaromonas jejuensis JS12-13 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil.

NCBI tax id

  • NCBI tax id: 457502
  • Matching level: species

strain history

  • @ref: 8066
  • history: <- S.-W. Kwon, KACC; JS12-13 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, Korea

doi: 10.13145/bacdive2984.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Polaromonas
  • species: Polaromonas jejuensis
  • full scientific name: Polaromonas jejuensis Weon et al. 2008

@ref: 8066

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Polaromonas

species: Polaromonas jejuensis

full scientific name: Polaromonas jejuensis Weon et al. 2008

strain designation: JS12-13

type strain: yes

Morphology

cell morphology

  • @ref: 23090
  • gram stain: negative
  • cell length: 1.0-3.0 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 23090
  • colony color: pale yellow
  • colony shape: circular
  • medium used: R2A agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8066R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23090nutrient agar (Difco)yes
23090Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
8066positivegrowth28mesophilic
23090positivegrowth5.0-30.0
23090positivegrowth30.0mesophilic
23090positiveoptimum28.0-30.0mesophilic

culture pH

@refabilitytypepHPH range
23090positivegrowth5.0-9.0alkaliphile
23090positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 23090
  • oxygen tolerance: aerobe

spore formation

  • @ref: 23090
  • spore formation: no

halophily

  • @ref: 23090
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.0-1.0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
230905291gelatin-fermentation
2309017234glucose-fermentation
23090168082-dehydro-D-gluconate-growth
23090161933-hydroxybenzoate-growth
23090178794-hydroxybenzoate-growth
23090181014-hydroxyphenylacetic acid-growth
23090174265-dehydro-D-gluconate-growth
2309017128adipate-growth
2309027689decanoate-growth
2309017634D-glucose-growth
2309016899D-mannitol-growth
2309016024D-mannose-growth
2309016988D-ribose-growth
2309017924D-sorbitol-growth
2309028087glycogen-growth
2309017268myo-inositol-growth
2309030849L-arabinose-growth
2309018287L-fucose-growth
2309062345L-rhamnose-growth
2309017115L-serine-growth
2309015792malonate-growth
2309017306maltose-growth
2309028053melibiose-growth
23090506227N-acetylglucosamine-growth
2309017814salicin-growth
2309032954sodium acetate-growth
2309017992sucrose-growth
2309031011valerate-growth
2309085146carboxymethylcellulose-hydrolysis
23090casein-hydrolysis
2309017029chitin-hydrolysis
2309016991dna-hydrolysis
230904853esculin-hydrolysis
2309017309pectin-hydrolysis
2309028017starch-hydrolysis
2309053426tween 80-hydrolysis
2309017632nitrate-reduction
23090370543-hydroxybutyrate+growth
2309017240itaconate+growth
2309016977L-alanine+growth
2309015971L-histidine+growth
23090L-proline-4-nitroanilide+growth
2309024996lactate+growth
2309025115malate+growth
2309032032potassium gluconate+growth
2309017272propionate+growth
2309053258sodium citrate+growth
230909300suberic acid+growth
2309017368hypoxanthine+hydrolysis
2309018186tyrosine+hydrolysis
2309015318xanthine+hydrolysis

metabolite production

  • @ref: 23090
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
23090acid phosphatase+3.1.3.2
23090alkaline phosphatase+3.1.3.1
23090alpha-chymotrypsin-3.4.21.1
23090alpha-fucosidase-3.2.1.51
23090alpha-galactosidase-3.2.1.22
23090alpha-glucosidase-3.2.1.20
23090alpha-mannosidase-3.2.1.24
23090arginine dihydrolase-3.5.3.6
23090beta-galactosidase+3.2.1.23
23090beta-glucosidase-3.2.1.21
23090beta-glucuronidase-3.2.1.31
23090cystine arylamidase-3.4.11.3
23090esterase (C 4)+
23090esterase lipase (C 8)+
23090leucine arylamidase+3.4.11.1
23090lipase (C 14)-
23090N-acetyl-beta-glucosaminidase-3.2.1.52
23090naphthol-AS-BI-phosphohydrolase+
23090trypsin-3.4.21.4
23090urease-3.5.1.5
23090valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperature
8066soilJeju Island, Halla MountainRepublic of KoreaKORAsia
23090R2A agar plates5 days28.0

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7358.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_884;97_1032;98_1351;99_7358&stattab=map
  • Last taxonomy: Polaromonas
  • 16S sequence: EU030285
  • Sequence Identity:
  • Total samples: 2242
  • soil counts: 743
  • aquatic counts: 917
  • animal counts: 220
  • plant counts: 362

Safety information

risk assessment

  • @ref: 8066
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8066
  • description: Polaromonas jejuensis strain JS12-13 16S ribosomal RNA gene, partial sequence
  • accession: EU030285
  • length: 1415
  • database: ena
  • NCBI tax ID: 1321608

GC content

@refGC-contentmethod
806663.7
2309063.7high performance liquid chromatography (HPLC)

External links

@ref: 8066

culture collection no.: DSM 19351, KACC 12508

straininfo link

  • @ref: 72506
  • straininfo: 402758

literature

  • topic: Phylogeny
  • Pubmed-ID: 18599688
  • title: Polaromonas jejuensis sp. nov., isolated from soil in Korea.
  • authors: Weon HY, Yoo SH, Hong SB, Kwon SW, Stackebrandt E, Go SJ, Koo BS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65529-0
  • year: 2008
  • mesh: Burkholderiaceae/chemistry/*classification/genetics/*isolation & purification, Fatty Acids/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8066Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19351)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19351
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23090Hang-Yeon Weon,Seung-Hee Yoo,Seung-Beom Hong,Soon-Wo Kwon,Erko Stackebrandt,Seung-Joo Go,Bon-Sung Koo10.1099/ijs.0.65529-0Polaromonas jejuensis sp. nov., isolated from soil in KoreaIJSEM 58: 1525-1528 200818599688
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72506Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402758.1StrainInfo: A central database for resolving microbial strain identifiers