Strain identifier
BacDive ID: 2984
Type strain:
Species: Polaromonas jejuensis
Strain Designation: JS12-13
Strain history: <- S.-W. Kwon, KACC; JS12-13 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, Korea
NCBI tax ID(s): 457502 (species)
General
@ref: 8066
BacDive-ID: 2984
DSM-Number: 19351
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming
description: Polaromonas jejuensis JS12-13 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil.
NCBI tax id
- NCBI tax id: 457502
- Matching level: species
strain history
- @ref: 8066
- history: <- S.-W. Kwon, KACC; JS12-13 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, Korea
doi: 10.13145/bacdive2984.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Polaromonas
- species: Polaromonas jejuensis
- full scientific name: Polaromonas jejuensis Weon et al. 2008
@ref: 8066
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Polaromonas
species: Polaromonas jejuensis
full scientific name: Polaromonas jejuensis Weon et al. 2008
strain designation: JS12-13
type strain: yes
Morphology
cell morphology
- @ref: 23090
- gram stain: negative
- cell length: 1.0-3.0 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 23090
- colony color: pale yellow
- colony shape: circular
- medium used: R2A agar
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8066 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
23090 | nutrient agar (Difco) | yes | ||
23090 | Reasoner's 2A agar (R2A) | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8066 | positive | growth | 28 | mesophilic |
23090 | positive | growth | 5.0-30.0 | |
23090 | positive | growth | 30.0 | mesophilic |
23090 | positive | optimum | 28.0-30.0 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
23090 | positive | growth | 5.0-9.0 | alkaliphile |
23090 | positive | optimum | 6.0-7.0 |
Physiology and metabolism
oxygen tolerance
- @ref: 23090
- oxygen tolerance: aerobe
spore formation
- @ref: 23090
- spore formation: no
halophily
- @ref: 23090
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0.0-1.0 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23090 | 5291 | gelatin | - | fermentation |
23090 | 17234 | glucose | - | fermentation |
23090 | 16808 | 2-dehydro-D-gluconate | - | growth |
23090 | 16193 | 3-hydroxybenzoate | - | growth |
23090 | 17879 | 4-hydroxybenzoate | - | growth |
23090 | 18101 | 4-hydroxyphenylacetic acid | - | growth |
23090 | 17426 | 5-dehydro-D-gluconate | - | growth |
23090 | 17128 | adipate | - | growth |
23090 | 27689 | decanoate | - | growth |
23090 | 17634 | D-glucose | - | growth |
23090 | 16899 | D-mannitol | - | growth |
23090 | 16024 | D-mannose | - | growth |
23090 | 16988 | D-ribose | - | growth |
23090 | 17924 | D-sorbitol | - | growth |
23090 | 28087 | glycogen | - | growth |
23090 | 17268 | myo-inositol | - | growth |
23090 | 30849 | L-arabinose | - | growth |
23090 | 18287 | L-fucose | - | growth |
23090 | 62345 | L-rhamnose | - | growth |
23090 | 17115 | L-serine | - | growth |
23090 | 15792 | malonate | - | growth |
23090 | 17306 | maltose | - | growth |
23090 | 28053 | melibiose | - | growth |
23090 | 506227 | N-acetylglucosamine | - | growth |
23090 | 17814 | salicin | - | growth |
23090 | 32954 | sodium acetate | - | growth |
23090 | 17992 | sucrose | - | growth |
23090 | 31011 | valerate | - | growth |
23090 | 85146 | carboxymethylcellulose | - | hydrolysis |
23090 | casein | - | hydrolysis | |
23090 | 17029 | chitin | - | hydrolysis |
23090 | 16991 | dna | - | hydrolysis |
23090 | 4853 | esculin | - | hydrolysis |
23090 | 17309 | pectin | - | hydrolysis |
23090 | 28017 | starch | - | hydrolysis |
23090 | 53426 | tween 80 | - | hydrolysis |
23090 | 17632 | nitrate | - | reduction |
23090 | 37054 | 3-hydroxybutyrate | + | growth |
23090 | 17240 | itaconate | + | growth |
23090 | 16977 | L-alanine | + | growth |
23090 | 15971 | L-histidine | + | growth |
23090 | L-proline-4-nitroanilide | + | growth | |
23090 | 24996 | lactate | + | growth |
23090 | 25115 | malate | + | growth |
23090 | 32032 | potassium gluconate | + | growth |
23090 | 17272 | propionate | + | growth |
23090 | 53258 | sodium citrate | + | growth |
23090 | 9300 | suberic acid | + | growth |
23090 | 17368 | hypoxanthine | + | hydrolysis |
23090 | 18186 | tyrosine | + | hydrolysis |
23090 | 15318 | xanthine | + | hydrolysis |
metabolite production
- @ref: 23090
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
23090 | acid phosphatase | + | 3.1.3.2 |
23090 | alkaline phosphatase | + | 3.1.3.1 |
23090 | alpha-chymotrypsin | - | 3.4.21.1 |
23090 | alpha-fucosidase | - | 3.2.1.51 |
23090 | alpha-galactosidase | - | 3.2.1.22 |
23090 | alpha-glucosidase | - | 3.2.1.20 |
23090 | alpha-mannosidase | - | 3.2.1.24 |
23090 | arginine dihydrolase | - | 3.5.3.6 |
23090 | beta-galactosidase | + | 3.2.1.23 |
23090 | beta-glucosidase | - | 3.2.1.21 |
23090 | beta-glucuronidase | - | 3.2.1.31 |
23090 | cystine arylamidase | - | 3.4.11.3 |
23090 | esterase (C 4) | + | |
23090 | esterase lipase (C 8) | + | |
23090 | leucine arylamidase | + | 3.4.11.1 |
23090 | lipase (C 14) | - | |
23090 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
23090 | naphthol-AS-BI-phosphohydrolase | + | |
23090 | trypsin | - | 3.4.21.4 |
23090 | urease | - | 3.5.1.5 |
23090 | valine arylamidase | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture duration | enrichment culture temperature |
---|---|---|---|---|---|---|---|---|
8066 | soil | Jeju Island, Halla Mountain | Republic of Korea | KOR | Asia | |||
23090 | R2A agar plates | 5 days | 28.0 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_7358.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_884;97_1032;98_1351;99_7358&stattab=map
- Last taxonomy: Polaromonas
- 16S sequence: EU030285
- Sequence Identity:
- Total samples: 2242
- soil counts: 743
- aquatic counts: 917
- animal counts: 220
- plant counts: 362
Safety information
risk assessment
- @ref: 8066
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8066
- description: Polaromonas jejuensis strain JS12-13 16S ribosomal RNA gene, partial sequence
- accession: EU030285
- length: 1415
- database: ena
- NCBI tax ID: 1321608
GC content
@ref | GC-content | method |
---|---|---|
8066 | 63.7 | |
23090 | 63.7 | high performance liquid chromatography (HPLC) |
External links
@ref: 8066
culture collection no.: DSM 19351, KACC 12508
straininfo link
- @ref: 72506
- straininfo: 402758
literature
- topic: Phylogeny
- Pubmed-ID: 18599688
- title: Polaromonas jejuensis sp. nov., isolated from soil in Korea.
- authors: Weon HY, Yoo SH, Hong SB, Kwon SW, Stackebrandt E, Go SJ, Koo BS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65529-0
- year: 2008
- mesh: Burkholderiaceae/chemistry/*classification/genetics/*isolation & purification, Fatty Acids/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8066 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19351) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19351 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23090 | Hang-Yeon Weon,Seung-Hee Yoo,Seung-Beom Hong,Soon-Wo Kwon,Erko Stackebrandt,Seung-Joo Go,Bon-Sung Koo | 10.1099/ijs.0.65529-0 | Polaromonas jejuensis sp. nov., isolated from soil in Korea | IJSEM 58: 1525-1528 2008 | 18599688 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72506 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402758.1 | StrainInfo: A central database for resolving microbial strain identifiers |