Strain identifier

BacDive ID: 2977

Type strain: Yes

Species: Malikia spinosa

Strain Designation: 83

Strain history: IAM 14918 <-- ATCC 14606 <-- E. Leifson 83.

NCBI tax ID(s): 86180 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6111

BacDive-ID: 2977

DSM-Number: 15801

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Malikia spinosa 83 is a mesophilic bacterium that was isolated from river water.

NCBI tax id

  • NCBI tax id: 86180
  • Matching level: species

strain history

@refhistory
6111<- ATCC <- E. Leifson; 83
67770IAM 14918 <-- ATCC 14606 <-- E. Leifson 83.

doi: 10.13145/bacdive2977.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Malikia
  • species: Malikia spinosa
  • full scientific name: Malikia spinosa (Leifson 1962) Spring et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas spinosa

@ref: 6111

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Malikia

species: Malikia spinosa

full scientific name: Malikia spinosa (Leifson 1962) Spring et al. 2005

strain designation: 83

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6111REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)yeshttps://mediadive.dsmz.de/medium/830cName: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
6111NUTRIENT AGAR (DSMZ Medium 1)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
6111TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

@refgrowthtypetemperaturerange
6111positivegrowth28mesophilic
67770positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6111river waterIllinois, Du PageUSAUSANorth America
67770River water

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

  • @ref: 6111
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Malikia spinosa gene for 16S rRNA, strain: ATCC 14606AB0213871497ena86180
20218Malikia spinosa gene for 16S rRNA, partial sequenceAB0770381508ena86180
20218Malikia spinosa gene for 16S rRNA, partial sequence, strain: NBRC 103164AB6819721456ena86180

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Malikia spinosa strain 8386180.3wgspatric86180
67770Malikia spinosa 83GCA_002980625contigncbi86180

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes82.979no
flagellatedyes63.612no
gram-positiveno98.882no
anaerobicno96.804no
halophileno93.652no
spore-formingno96.008no
glucose-utilyes63.778no
aerobicyes86.228no
thermophileno98.371yes
glucose-fermentno86.161no

External links

@ref: 6111

culture collection no.: DSM 15801, ATCC 14606, JCM 21400, IAM 14918, LMG 21751, NBRC 103164, NCIMB 14272

straininfo link

  • @ref: 72499
  • straininfo: 46519

literature

  • topic: Phylogeny
  • Pubmed-ID: 15774634
  • title: Malikia granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphate-accumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikia spinosa comb. nov.
  • authors: Spring S, Wagner M, Schumann P, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63356-0
  • year: 2005
  • mesh: Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polyesters/*metabolism, Polyphosphates/*metabolism, Pseudomonas/*classification/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6111Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15801)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15801
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
72499Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46519.1StrainInfo: A central database for resolving microbial strain identifiers