Strain identifier

BacDive ID: 2958

Type strain: Yes

Species: Giesbergeria giesbergeri

Strain history: CIP <- 2001, NCIMB <- M. A. Williams, Howard Univ., USA

NCBI tax ID(s): 180194 (species)

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General

@ref: 3493

BacDive-ID: 2958

DSM-Number: 9157

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Giesbergeria giesbergeri DSM 9157 is a mesophilic, Gram-negative, motile bacterium that was isolated from pondwater.

NCBI tax id

  • NCBI tax id: 180194
  • Matching level: species

strain history

@refhistory
3493<- ATCC <- NCIB <- S. Rittenberg
67770IAM 14949 <-- IFO 13959 <-- Y. Terasaki <-- M. A. Williams.
119614CIP <- 2001, NCIMB <- M. A. Williams, Howard Univ., USA

doi: 10.13145/bacdive2958.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Giesbergeria
  • species: Giesbergeria giesbergeri
  • full scientific name: Giesbergeria giesbergeri (Williams and Rittenberg 1957) Grabovich et al. 2006

  • synonyms

    @refsynonym
    20215Spirillum giesbergeri
    20215Aquaspirillum giesbergeri

@ref: 3493

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Giesbergeria

species: Giesbergeria giesbergeri

full scientific name: Giesbergeria giesbergeri (Williams and Rittenberg 1957) Grabovich et al. 2006

type strain: yes

Morphology

cell morphology

  • @ref: 119614
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3493NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
33764MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genusyesDistilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g)
119614CIP Medium 14yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14

culture temp

@refgrowthtypetemperaturerange
3493positivegrowth30mesophilic
33764positivegrowth25mesophilic
67770positivegrowth30mesophilic
119614positivegrowth15-37
119614nogrowth5psychrophilic
119614nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
119614NaClpositivegrowth0 %
119614NaClnogrowth2 %
119614NaClnogrowth4 %
119614NaClnogrowth6 %
119614NaClnogrowth8 %
119614NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119614citrate-carbon source16947
119614esculin-hydrolysis4853
119614glucose-fermentation17234
119614lactose-fermentation17716
119614nitrate-reduction17632
119614nitrite-reduction16301
119614sodium thiosulfate-builds gas from132112
119614glucose-degradation17234
119614nitrate-respiration17632

antibiotic resistance

  • @ref: 119614
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119614
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11961415688acetoin-
11961417234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119614oxidase+
119614beta-galactosidase+/-3.2.1.23
119614alcohol dehydrogenase-1.1.1.1
119614gelatinase-
119614amylase-
119614DNase+
119614caseinase-3.4.21.50
119614catalase+1.11.1.6
119614tween esterase-
119614lecithinase-
119614lipase-
119614lysine decarboxylase-4.1.1.18
119614ornithine decarboxylase-4.1.1.17
119614phenylalanine ammonia-lyase-4.3.1.24
119614tryptophan deaminase-
119614urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119614-+++-+--------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119614------------------------------------------------+/-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119614------------------+-------------------------------------------+--+--------------------+------------

Isolation, sampling and environmental information

isolation

@refsample type
3493pondwater
67770Pond water
119614Environment, Pond water

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Pond (small)

taxonmaps

  • @ref: 69479
  • File name: preview.99_30964.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_9748;97_11746;98_17657;99_30964&stattab=map
  • Last taxonomy: Giesbergeria
  • 16S sequence: AB680537
  • Sequence Identity:
  • Total samples: 318
  • soil counts: 10
  • aquatic counts: 272
  • animal counts: 29
  • plant counts: 7

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34931Risk group (German classification)
1196141Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aquaspirillum giesbergeri gene for 16S rRNA, partial sequenceAB0745221486ena180194
20218Giesbergeria giesbergeri gene for 16S rRNA, partial sequence, strain: NBRC 13959AB6805371458ena180194

External links

@ref: 3493

culture collection no.: DSM 9157, ATCC 11334, NCIB 9073, NRRL B-2060, JCM 21431, IAM 14949, IFO 13959, LMG 4331, NBRC 13959, NCIMB 9073, CIP 107316

straininfo link

  • @ref: 72480
  • straininfo: 895

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3493Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9157)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9157
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33764Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4738
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72480Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID895.1StrainInfo: A central database for resolving microbial strain identifiers
119614Curators of the CIPCollection of Institut Pasteur (CIP 107316)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107316