Strain identifier
BacDive ID: 2955
Type strain: 
Species: Diaphorobacter sp.
Strain Designation: LW1
Strain history: <- E. Katsivela, GBF; LW1
NCBI tax ID(s): 1934310 (species)
version 9 (current version)
General
@ref: 4968
BacDive-ID: 2955
DSM-Number: 13225
keywords: 16S sequence, Bacteria
description: Diaphorobacter sp. LW1 is a bacterium that was isolated from water of river Elbe.
NCBI tax id
- NCBI tax id: 1934310
- Matching level: species
strain history
- @ref: 4968
- history: <- E. Katsivela, GBF; LW1
doi: 10.13145/bacdive2955.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Diaphorobacter
- species: Diaphorobacter sp.
- full scientific name: Diaphorobacter Khan and Hiraishi 2003
@ref: 4968
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Diaphorobacter
species: Diaphorobacter sp.
full scientific name: Diaphorobacter sp.
strain designation: LW1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4968 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 4968 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | yes | https://mediadive.dsmz.de/medium/457 | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
culture temp
- @ref: 4968
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 4968
- sample type: water of river Elbe
- geographic location: Elbe river
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
taxonmaps
- @ref: 69479
- File name: preview.99_1320.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_491;97_892;98_1045;99_1320&stattab=map
- Last taxonomy: Diaphorobacter nitroreducens
- 16S sequence: AJ130765
- Sequence Identity:
- Total samples: 21200
- soil counts: 4505
- aquatic counts: 6609
- animal counts: 8073
- plant counts: 2013
Sequence information
16S sequences
- @ref: 4968
- description: Acidovorax sp. 16S rRNA gene,isolate LW1, partial
- accession: AJ130765
- length: 1483
- database: nuccore
- NCBI tax ID: 85547
External links
@ref: 4968
culture collection no.: DSM 13225
straininfo link
- @ref: 72477
- straininfo: 49437
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4968 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13225) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13225 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72477 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49437.1 | StrainInfo: A central database for resolving microbial strain identifiers |