Strain identifier
BacDive ID: 2944
Type strain: 
Species: Delftia acidovorans
Strain Designation: SPB1
Strain history: <- S. Schulz; SPB1
NCBI tax ID(s): 80866 (species)
version 8.1 (current version)
General
@ref: 4687
BacDive-ID: 2944
DSM-Number: 12586
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Delftia acidovorans SPB1 is a mesophilic human pathogen that was isolated from sewage treatment plant.
NCBI tax id
- NCBI tax id: 80866
- Matching level: species
strain history
- @ref: 4687
- history: <- S. Schulz; SPB1
doi: 10.13145/bacdive2944.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Delftia
- species: Delftia acidovorans
- full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
synonyms
@ref synonym 20215 Pseudomonas acidovorans 20215 Comamonas acidovorans
@ref: 4687
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Delftia
species: Delftia acidovorans
full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
strain designation: SPB1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4687 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 4687 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | yes | https://mediadive.dsmz.de/medium/457 | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
culture temp
- @ref: 4687
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 4687
- sample type: sewage treatment plant
- geographic location: Radolfzell
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Water treatment plant
Safety information
risk assessment
- @ref: 4687
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Delftia lacustris strain FDAARGOS_890
- accession: 558537.13
- assembly level: complete
- database: patric
- NCBI tax ID: 558537
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.282 | no |
| anaerobic | no | 98.369 | no |
| halophile | no | 95.62 | no |
| spore-forming | no | 93.608 | no |
| glucose-util | no | 57.634 | no |
| aerobic | yes | 92.834 | no |
| thermophile | no | 99.661 | no |
| motile | yes | 91.189 | no |
| flagellated | yes | 62.808 | no |
| glucose-ferment | no | 89.177 | no |
External links
@ref: 4687
culture collection no.: DSM 12586
straininfo link
- @ref: 72466
- straininfo: 49327
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4687 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12586) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12586 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 72466 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49327.1 | StrainInfo: A central database for resolving microbial strain identifiers |