Strain identifier
BacDive ID: 2940
Type strain: 
Species: Delftia acidovorans
Strain Designation: D
Strain history: <- A.M. Cook, D
NCBI tax ID(s): 80866 (species)
version 8.1 (current version)
General
@ref: 836
BacDive-ID: 2940
DSM-Number: 1621
keywords: genome sequence, Bacteria, mesophilic, motile, human pathogen
description: Delftia acidovorans D is a mesophilic, motile human pathogen that was isolated from sewage.
NCBI tax id
- NCBI tax id: 80866
- Matching level: species
strain history
- @ref: 836
- history: <- A.M. Cook, D
doi: 10.13145/bacdive2940.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Delftia
- species: Delftia acidovorans
- full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
synonyms
@ref synonym 20215 Pseudomonas acidovorans 20215 Comamonas acidovorans
@ref: 836
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Delftia
species: Delftia acidovorans
full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
strain designation: D
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.882 | |
| 69480 | 99.997 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 836 | DIETHYL PHOSPHONATE MEDIUM (DSMZ Medium 239) | yes | https://mediadive.dsmz.de/medium/239 | Name: DIETHYL PHOSPHONATE MEDIUM (DSMZ Medium 239) Composition: Agar 12.0 g/l Tris(hydroxymethyl)methylamine 6.0 g/l p-Hydroxybenzoate 0.75 g/l NH4Cl 0.2 g/l MgSO4 x 7 H2O 0.2 g/l KCl 0.2 g/l Diethyl phosphonate Distilled water |
| 836 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium457.pdf | |
| 836 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 836 | positive | growth | 30 | mesophilic |
| 836 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.991 |
Isolation, sampling and environmental information
isolation
- @ref: 836
- sample type: sewage
- geographic location: Ithaca
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Wastewater
Safety information
risk assessment
- @ref: 836
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Delftia acidovorans strain FDAARGOS_909
- accession: 80866.54
- assembly level: complete
- database: patric
- NCBI tax ID: 80866
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.372 | no |
| flagellated | yes | 67.427 | no |
| gram-positive | no | 98.23 | no |
| anaerobic | no | 98.726 | no |
| halophile | no | 94.928 | no |
| spore-forming | no | 95.045 | no |
| glucose-util | no | 62.292 | no |
| aerobic | yes | 94.248 | no |
| thermophile | no | 99.706 | yes |
| glucose-ferment | no | 89.277 | no |
External links
@ref: 836
culture collection no.: DSM 1621
straininfo link
- @ref: 72462
- straininfo: 47461
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 836 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1621) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1621 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 72462 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47461.1 | StrainInfo: A central database for resolving microbial strain identifiers |