Strain identifier

BacDive ID: 291

Type strain: Yes

Species: Oceanisphaera litoralis

Strain Designation: R5

Culture col. no.: DSM 15406, CIP 108812, KCTC 23479, KMM 3654

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5796

BacDive-ID: 291

DSM-Number: 15406

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Oceanisphaera litoralis R5 is a mesophilic bacterium that was isolated from bottom sediments.

strain history

doi: 10.13145/bacdive291.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Oceanisphaera
  • species: Oceanisphaera litoralis
  • full scientific name: Oceanisphaera litoralis Romanenko et al. 2003

@ref: 5796

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Oceanisphaera

species: Oceanisphaera litoralis

full scientific name: Oceanisphaera litoralis Romanenko et al. 2003

strain designation: R5

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5796BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
36410Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
5796positivegrowth28mesophilic
36410positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5796
  • sample type: bottom sediments
  • geographic location: Sea of Japan
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Sediment

Safety information

risk assessment

  • @ref: 5796
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5796
  • description: Oceanisphaera litoralis 16S rRNA gene, type strain DSM 15406
  • accession: AJ550470
  • length: 1506
  • database: ena
  • NCBI tax ID: 225144

Genome sequences

  • @ref: 66792
  • description: Oceanisphaera litoralis DSM 15406
  • accession: 2861657729
  • assembly level: permanent
  • database: img
  • NCBI tax ID: 225144

External links

@ref: 5796

culture collection no.: DSM 15406, CIP 108812, KCTC 23479, KMM 3654

straininfo link

@refpassport
20218http://www.straininfo.net/strains/295684
20218http://www.straininfo.net/strains/840847
20218http://www.straininfo.net/strains/371350

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5796Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15406)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15406
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36410Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6482
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)