Strain identifier

BacDive ID: 2902

Type strain: Yes

Species: Acidovorax cattleyae

Strain history: <- ICPB <- D. W. Dye; NL1 <- NCPPB <- P.A. Ark

NCBI tax ID(s): 80868 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6760

BacDive-ID: 2902

DSM-Number: 17101

keywords: plant pathogen, mesophilic, genome sequence, Bacteria, 16S sequence

description: Acidovorax cattleyae DSM 17101 is a mesophilic plant pathogen of the family Comamonadaceae.

NCBI tax id

  • NCBI tax id: 80868
  • Matching level: species

strain history: <- ICPB <- D. W. Dye; NL1 <- NCPPB <- P.A. Ark

doi: 10.13145/bacdive2902.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Acidovorax
  • species: Acidovorax cattleyae
  • full scientific name: Acidovorax cattleyae (Pavarino 1911) Schaad et al. 2009
  • synonyms

    @refsynonym
    20215Pseudomonas cattleyae
    20215Acidovorax avenae subsp. cattleyae
    20215Bacterium cattleyae

@ref: 6760

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax cattleyae

full scientific name: Acidovorax cattleyae (Pavarino 1911) Schaad et al. 2009

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6760NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38626MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
6760positivegrowth28mesophilic
38626positivegrowth30mesophilic
47531positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6760---++----+-+--+-++--+
6760----+----+-+--+--+--+
6760----+----+-+--+--+--+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsampling date
38626MoroccoMARAfrica
475311950

Safety information

risk assessment

  • @ref: 6760
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acidovorax cattleyae strain NCPPB 961 16S ribosomal RNA gene, partial sequenceAF0787621514ena80868
20218Acidovorax cattleyae strain ICMP 2826 16S ribosomal RNA gene, partial sequenceGU3390871491ena80868
20218Acidovorax cattleyae strain ICMP 2826 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceGU339094897ena80868
6760Acidovorax cattleyae strain ICMP 2826 16S ribosomal RNA gene, partial sequenceAF1375041481ena80868

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidovorax cattleyae DSM 17101GCA_900104515scaffoldncbi80868
66792Acidovorax cattleyae strain DSM 1710180868.3wgspatric80868
66792Acidovorax cattleyae DSM 171012634166355draftimg80868

External links

@ref: 6760

culture collection no.: DSM 17101, ATCC 33619, CFBP 2423, ICMP 2826, ICPB PC21, LMG 2364, NCPPB 961, NRRL B835, CCUG 21975, NRRL B-835, CIP 106435

straininfo link

@refpassport
20218http://www.straininfo.net/strains/386350
20218http://www.straininfo.net/strains/830
20218http://www.straininfo.net/strains/534227
20218http://www.straininfo.net/strains/832
20218http://www.straininfo.net/strains/833
20218http://www.straininfo.net/strains/829
20218http://www.straininfo.net/strains/835
20218http://www.straininfo.net/strains/836

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6760Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17101)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17101
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38626Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18565
47531Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 21975)https://www.ccug.se/strain?id=21975
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)