Strain identifier

BacDive ID: 2900

Type strain: Yes

Species: Acidovorax anthurii

Strain Designation: P1G31

Strain history: CIP <- 2001, CFBP <- Prior P.: strain P1G31

NCBI tax ID(s): 78229 (species)

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General

@ref: 6489

BacDive-ID: 2900

DSM-Number: 16745

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, plant pathogen

description: Acidovorax anthurii P1G31 is an aerobe, mesophilic, Gram-negative plant pathogen that was isolated from Anthurium sp..

NCBI tax id

  • NCBI tax id: 78229
  • Matching level: species

strain history

@refhistory
6489<- CFBP <- P. Prior; P1G31
354602001, CFBP
116414CIP <- 2001, CFBP <- Prior P.: strain P1G31

doi: 10.13145/bacdive2900.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Acidovorax
  • species: Acidovorax anthurii
  • full scientific name: Acidovorax anthurii Gardan et al. 2000

  • synonyms

    • @ref: 20215
    • synonym: Paracidovorax anthurii

@ref: 6489

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax anthurii

full scientific name: Acidovorax anthurii Gardan et al. 2000

strain designation: P1G31

type strain: yes

Morphology

cell morphology

  • @ref: 116414
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 116414
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6489REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)yeshttps://mediadive.dsmz.de/medium/830cName: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
35460MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116414CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6489positivegrowth28mesophilic
35460positivegrowth30mesophilic
63061positivegrowth30mesophilic
116414positivegrowth25-37mesophilic
116414nogrowth5psychrophilic
116414nogrowth10psychrophilic
116414nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
63061aerobe
116414obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
116414NaClpositivegrowth0-2 %
116414NaClnogrowth4 %
116414NaClnogrowth6 %
116414NaClnogrowth8 %
116414NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11641416947citrate-carbon source
1164144853esculin-hydrolysis
11641417632nitrate-reduction
11641416301nitrite-reduction
11641417632nitrate-respiration

antibiotic resistance

  • @ref: 116414
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11641435581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
116414oxidase+
116414beta-galactosidase-3.2.1.23
116414alcohol dehydrogenase-1.1.1.1
116414gelatinase-
116414amylase-
116414DNase-
116414caseinase-3.4.21.50
116414catalase+1.11.1.6
116414tween esterase-
116414lecithinase-
116414lipase-
116414lysine decarboxylase-4.1.1.18
116414ornithine decarboxylase-4.1.1.17
116414phenylalanine ammonia-lyase-4.3.1.24
116414protease-
116414tryptophan deaminase-
116414urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116414-+++-+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6489+---+----+-+--+--+--+
6489+---+----+-+--+--+--+
6489+---+----+-+--+--+--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116414-++-----------------+-----+----+-+----------+-+-++----------+----+-------+-+---++--+----++++-+++-+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationorigin.countrycontinentsampling datecountryisolation date
6489Anthurium sp.AnthuriumMartiniqueFRAMiddle and South America
63061Anthurium leaf-spotMartiniqueFRA2001France
116414Anthurium sp.MartiniqueFRAEuropeFrance1991

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_115091.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_491;97_560;98_8087;99_115091&stattab=map
  • Last taxonomy: Acidovorax
  • 16S sequence: LN849457
  • Sequence Identity:
  • Total samples: 325
  • soil counts: 19
  • aquatic counts: 248
  • animal counts: 23
  • plant counts: 35

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
6489yes1Risk group (German classification)
1164141Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6489Acidovorax anthurii partial 16S rRNA gene, type strain DSM 16745T, isolate P1G31LN8494571523ena78229
6489Acidovorax anthurii 16S rRNA gene, partialAJ0070131486ena78229

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidovorax anthurii strain CFPB 323278229.3wgspatric78229
66792Acidovorax anthurii DSM 167452636415976draftimg78229

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.669no
flagellatedyes70.986no
gram-positiveno98.6no
anaerobicno98.982no
halophileno96.548no
spore-formingno92.876no
glucose-utilyes65.205no
aerobicyes95.041yes
thermophileno99.432yes
glucose-fermentno88.671yes

External links

@ref: 6489

culture collection no.: DSM 16745, CFBP 3232, CCUG 64016, CIP 107058

straininfo link

  • @ref: 72423
  • straininfo: 87858

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826809Acidovorax anthurii sp. nov., a new phytopathogenic bacterium which causes bacterial leaf-spot of anthurium.Gardan L, Dauga C, Prior P, Gillis M, Saddler GSInt J Syst Evol Microbiol10.1099/00207713-50-1-2352000Base Composition, Betaproteobacteria/*classification/isolation & purification/pathogenicity/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Magnoliopsida/*microbiology, Mathematics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Plant Diseases/*microbiology, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, VirulenceGenetics
Phylogeny28553696Acidovorax lacteus sp. nov., isolated from a culture of a bloom-forming cyanobacterium (Microcystis sp.).Chun SJ, Cui Y, Ko SR, Lee HG, Srivastava A, Oh HM, Ahn CYAntonie Van Leeuwenhoek10.1007/s10482-017-0892-92017Base Composition, Comamonadaceae/chemistry/*classification/genetics/physiology, Enzymes/analysis, Eutrophication, Lakes/*microbiology, Microcystis/chemistry/classification/genetics/physiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Species SpecificityEnzymology
Phylogeny29627890Acidovorax monticola sp. nov., isolated from soil.Chaudhary DK, Kim JAntonie Van Leeuwenhoek10.1007/s10482-018-1083-z2018Base Composition, Betaproteobacteria/*classification/genetics/isolation & purification, Forests, Metabolomics/methods, Molecular Typing, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyPhenotype
Phylogeny33724913Acidovorax antarcticus sp. nov., isolated from a soil sample of Collins Glacier front, Antarctica.Xu Q, Peng X, Wang Y, Lu L, Zhang Y, Qin K, Liu J, Peng FInt J Syst Evol Microbiol10.1099/ijsem.0.0047442021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6489Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16745)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16745
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35460Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19257
63061Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 64016)https://www.ccug.se/strain?id=64016
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72423Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87858.1StrainInfo: A central database for resolving microbial strain identifiers
116414Curators of the CIPCollection of Institut Pasteur (CIP 107058)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107058