Strain identifier

BacDive ID: 2893

Type strain: Yes

Species: Pseudomonas avenae subsp. konjaci

Strain Designation: K2

Strain history: M. Goto strain K2.

NCBI tax ID(s): 32040 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3180

BacDive-ID: 2893

DSM-Number: 7481

keywords: plant pathogen, mesophilic, Bacteria, 16S sequence, genome sequence

description: Pseudomonas avenae subsp. konjaci K2 is a mesophilic plant pathogen that was isolated from Amorphophallus rivieri cv. konjaci.

NCBI tax id

  • NCBI tax id: 32040
  • Matching level: species

strain history

doi: 10.13145/bacdive2893.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas avenae subsp. konjaci
  • full scientific name: Pseudomonas avenae subsp. konjaci (Goto 1983) Hu et al. 1991
  • synonyms

    @refsynonym
    20215Acidovorax konjaci
    20215Pseudomonas pseudoalcaligenes subsp. konjaci

@ref: 3180

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax konjaci

full scientific name: Acidovorax konjaci (Goto 1983) Willems et al. 1992

strain designation: K2

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3180NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39525MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
3180positivegrowth28mesophilic
39525positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46608--++-+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46608+-------+++++++++++-+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling date
3180Amorphophallus rivieri cv. konjaciAmorphophallus rivieriShizuokaJapanJPNAsia
46608Amorphophallus rivieri cv. KonjacJapanJPNAsia1977
67770Amorphophalus rivieri cv. KonjacAmorphophalus rivieri

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 3180
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acidovorax konjaci 16S ribosomal RNA gene, partial sequenceAF0787601513ena32040
20218Mycobacterium goodii strain CIP 106349 16S ribosomal RNA gene, partial sequenceAF547930544ena134601
20218Acidovorax konjaci 16S rRNA gene, strain DSM 7481AJ4203251490ena32040
20218Acidovorax konjaci 16S ribosomal RNA gene, partial sequenceAF1375071481ena32040
20218Acidovorax konjaci strain ICMP 7733 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceGU339095871ena32040

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidovorax konjaci DSM 7481GCA_900112675scaffoldncbi32040
66792Acidovorax konjaci strain DSM 748132040.4wgspatric32040
66792Acidovorax konjaci DSM 74812634166315draftimg32040
67770Acidovorax konjaci strain DSM 7481, whole genome shotgun sequencing projectFOMQ00000000ncbi32040

GC content

  • @ref: 3180
  • GC-content: 68.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3180

culture collection no.: DSM 7481, ATCC 33996, CCUG 17394, ICMP 7733, LMG 5691, JCM 2397, CIP 106439, CFBP 4460, NCPPB 3698

straininfo link

@refpassport
20218http://www.straininfo.net/strains/148007
20218http://www.straininfo.net/strains/919
20218http://www.straininfo.net/strains/126152
20218http://www.straininfo.net/strains/921
20218http://www.straininfo.net/strains/918

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3180Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7481)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7481
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39525Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18570
46608Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 17394)https://www.ccug.se/strain?id=17394
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym