Strain identifier

BacDive ID: 2888

Type strain: Yes

Species: Acidovorax facilis

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 347

BacDive-ID: 2888

DSM-Number: 649

keywords: mesophilic, Bacteria, 16S sequence

description: Acidovorax facilis DSM 649 is a mesophilic bacterium of the family Comamonadaceae.

strain history: <- ATCC <- A. Schatz (Hydrogenomonas facilis)

doi: 10.13145/bacdive2888.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Acidovorax
  • species: Acidovorax facilis
  • full scientific name: Acidovorax facilis (Schatz and Bovell 1952) Willems et al. 1990
  • synonyms

    @refsynonym
    20215Hydrogenomonas facilis
    20215Pseudomonas facilis

@ref: 347

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax facilis

full scientific name: Acidovorax facilis (Schatz and Bovell 1952) Willems et al. 1990

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
347MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium81.pdf
347Nutrient agar (NA)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
40593MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
347positivegrowth30mesophilic
40593positivegrowth25mesophilic
44487positivegrowth30mesophilic

Physiology and metabolism

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44487C12:04.712
    44487C14:04.914
    44487C16:027.316
    44487C10:0 3OH411.423
    44487C16:1 ω7c44.515.819
    44487C18:1 ω7c /12t/9t12.417.824
    44487C18:2 ω6,9c/C18:0 ANTE1.317.724
    44487C8:0 3OH0.99.385
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44487-+++-+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
44487+-------------------+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
40593USAUSANorth America
44487USAUSANorth AmericaLawn soil

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Garden
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 347
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acidovorax facilis strain FC-208 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceDQ360425622ena12917
20218Acidovorax facilis 16S ribosomal RNA gene, partial sequenceAF0787651511ena12917
20218Acidovorax facilis 16S rRNA gene, strain DSM 649AJ4203241311ena12917
20218P.facilis 16S rRNAX59169158ena12917
20218Acidovorax facilis strain LMG 2193 16S ribosomal RNA gene, partial sequenceEU0241331318ena12917

External links

@ref: 347

culture collection no.: DSM 649, ATCC 11228, CCUG 2113, LMG 6221, LMG 2193, CCM 4561

straininfo link

@refpassport
20218http://www.straininfo.net/strains/899
20218http://www.straininfo.net/strains/896

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
347Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 649)https://www.dsmz.de/collection/catalogue/details/culture/DSM-649
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40593Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15084
44487Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 2113)https://www.ccug.se/strain?id=2113